Computational models for active matter

MR Shaebani, A Wysocki, RG Winkler… - Nature Reviews …, 2020 - nature.com
Active matter, which ranges from molecular motors to groups of animals, exists at different
length scales and timescales, and various computational models have been proposed to …

From actin waves to mechanism and back: how theory aids biological understanding

C Beta, L Edelstein-Keshet, N Gov, A Yochelis - Elife, 2023 - elifesciences.org
Actin dynamics in cell motility, division, and phagocytosis is regulated by complex factors
with multiple feedback loops, often leading to emergent dynamic patterns in the form of …

[图书][B] Stochastic processes in cell biology

PC Bressloff - 2014 - Springer
One of the major challenges in modern biology is to understand how the molecular
components of a living cell operate in a highly noisy environment. What are the specific …

Matrix geometry determines optimal cancer cell migration strategy and modulates response to interventions

M Tozluoğlu, AL Tournier, RP Jenkins, S Hooper… - Nature cell …, 2013 - nature.com
The molecular requirements and morphology of migrating cells can vary depending on
matrix geometry; therefore, predicting the optimal migration strategy or the effect of …

Wave-pinning and cell polarity from a bistable reaction-diffusion system

Y Mori, A Jilkine, L Edelstein-Keshet - Biophysical journal, 2008 - cell.com
Motile eukaryotic cells polarize in response to external signals. Numerous mechanisms
have been suggested to account for this symmetry breaking and for the ensuing robust …

Emergent complexity of the cytoskeleton: from single filaments to tissue

F Huber, J Schnauß, S Rönicke, P Rauch… - Advances in …, 2013 - Taylor & Francis
Despite their overwhelming complexity, living cells display a high degree of internal
mechanical and functional organization which can largely be attributed to the intracellular …

A comparison of mathematical models for polarization of single eukaryotic cells in response to guided cues

A Jilkine, L Edelstein-Keshet - PLoS computational biology, 2011 - journals.plos.org
Polarization, a primary step in the response of an individual eukaryotic cell to a spatial
stimulus, has attracted numerous theoretical treatments complementing experimental …

Navigating through models of chemotaxis

PA Iglesias, PN Devreotes - Current opinion in cell biology, 2008 - Elsevier
Chemotaxis in eukaryotic cells involves the coordination of several related but separable
processes: motility, polarization, and gradient sensing. Mathematical models that have been …

The shape of motile cells

A Mogilner, K Keren - Current Biology, 2009 - cell.com
Motile cells—fan-like keratocytes, hand-shaped nerve growth cones, polygonal fibroblasts,
to name but a few—come in different shapes and sizes. We discuss the origins of this …

Mathematical modeling of eukaryotic cell migration: insights beyond experiments

G Danuser, J Allard, A Mogilner - Annual review of cell and …, 2013 - annualreviews.org
A migrating cell is a molecular machine made of tens of thousands of short-lived and
interacting parts. Understanding migration means understanding the self-organization of …