Challenges and opportunities in cancer drug resistance
RA Ward, S Fawell, N Floc'h, V Flemington… - Chemical …, 2020 - ACS Publications
There has been huge progress in the discovery of targeted cancer therapies in recent years.
However, even for the most successful and impactful cancer drugs which have been …
However, even for the most successful and impactful cancer drugs which have been …
The role of protein loops and linkers in conformational dynamics and allostery
Proteins are dynamic entities that undergo a plethora of conformational changes that may
take place on a wide range of time scales. These changes can be as small as the rotation of …
take place on a wide range of time scales. These changes can be as small as the rotation of …
ALS mutations disrupt phase separation mediated by α-helical structure in the TDP-43 low-complexity C-terminal domain
RNA-binding protein TDP-43 mediates essential RNA processing but forms cytoplasmic
neuronal inclusions via its C-terminal domain (CTD) in amyotrophic lateral sclerosis (ALS). It …
neuronal inclusions via its C-terminal domain (CTD) in amyotrophic lateral sclerosis (ALS). It …
Role of molecular dynamics and related methods in drug discovery
Molecular dynamics (MD) and related methods are close to becoming routine computational
tools for drug discovery. Their main advantage is in explicitly treating structural flexibility and …
tools for drug discovery. Their main advantage is in explicitly treating structural flexibility and …
Enhanced sampling in molecular dynamics using metadynamics, replica-exchange, and temperature-acceleration
We review a selection of methods for performing enhanced sampling in molecular dynamics
simulations. We consider methods based on collective variable biasing and on tempering …
simulations. We consider methods based on collective variable biasing and on tempering …
A structural perspective on the regulation of the epidermal growth factor receptor
The epidermal growth factor receptor (EGFR) is a receptor tyrosine kinase that plays a
critical role in the pathogenesis of many cancers. The structure of intact forms of this receptor …
critical role in the pathogenesis of many cancers. The structure of intact forms of this receptor …
The next tier of EGFR resistance mutations in lung cancer
HL Tumbrink, A Heimsoeth, ML Sos - Oncogene, 2021 - nature.com
EGFR mutations account for the majority of druggable targets in lung adenocarcinoma. Over
the past decades the optimization of EGFR inhibitors revolutionized the treatment options for …
the past decades the optimization of EGFR inhibitors revolutionized the treatment options for …
Mechanisms of EGFR resistance in glioblastoma
PC Pan, RS Magge - International journal of molecular sciences, 2020 - mdpi.com
Glioblastoma (GBM) is the most common primary malignant brain tumor in adults. Despite
numerous efforts to target epidermal growth factor receptor (EGFR), commonly dysregulated …
numerous efforts to target epidermal growth factor receptor (EGFR), commonly dysregulated …
Investigating drug–target association and dissociation mechanisms using metadynamics-based algorithms
Conspectus This Account highlights recent advances and discusses major challenges in the
field of drug-target recognition, binding, and unbinding studied using metadynamics-based …
field of drug-target recognition, binding, and unbinding studied using metadynamics-based …
An efficient metadynamics-based protocol to model the binding affinity and the transition state ensemble of G-protein-coupled receptor ligands
N Saleh, P Ibrahim, G Saladino… - Journal of chemical …, 2017 - ACS Publications
A generally applicable metadynamics scheme for predicting the free energy profile of ligand
binding to G-protein-coupled receptors (GPCRs) is described. A common and effective …
binding to G-protein-coupled receptors (GPCRs) is described. A common and effective …