A critical analysis of codon optimization in human therapeutics

VP Mauro, SA Chappell - Trends in molecular medicine, 2014 - cell.com
Codon optimization describes gene engineering approaches that use synonymous codon
changes to increase protein production. Applications for codon optimization include …

Human mitochondrial tRNAs: biogenesis, function, structural aspects, and diseases

T Suzuki, A Nagao, T Suzuki - Annual review of genetics, 2011 - annualreviews.org
Mitochondria are eukaryotic organelles that generate most of the energy in the cell by
oxidative phosphorylation (OXPHOS). Each mitochondrion contains multiple copies of a …

The evolution of the plastid chromosome in land plants: gene content, gene order, gene function

S Wicke, GM Schneeweiss, CW Depamphilis… - Plant molecular …, 2011 - Springer
This review bridges functional and evolutionary aspects of plastid chromosome architecture
in land plants and their putative ancestors. We provide an overview on the structure and …

Engineering plastid genomes: methods, tools, and applications in basic research and biotechnology

R Bock - Annual Review of Plant Biology, 2015 - annualreviews.org
The small bacterial-type genome of the plastid (chloroplast) can be engineered by genetic
transformation, generating cells and plants with transgenic plastid genomes, also referred to …

A complete landscape of post-transcriptional modifications in mammalian mitochondrial tRNAs

T Suzuki, T Suzuki - Nucleic acids research, 2014 - academic.oup.com
In mammalian mitochondria, 22 species of tRNAs encoded in mitochondrial DNA play
crucial roles in the translation of 13 essential subunits of the respiratory chain complexes …

Extreme reconfiguration of plastid genomes in the angiosperm family Geraniaceae: rearrangements, repeats, and codon usage

MM Guisinger, JV Kuehl, JL Boore… - Molecular biology and …, 2011 - academic.oup.com
Geraniaceae plastid genomes (plastomes) have experienced a remarkable number of
genomic changes. The plastomes of Erodium texanum, Geranium palmatum, and Monsonia …

Mechanisms of functional and physical genome reduction in photosynthetic and nonphotosynthetic parasitic plants of the broomrape family

S Wicke, KF Müller, CW de Pamphilis, D Quandt… - The Plant …, 2013 - academic.oup.com
Nonphotosynthetic plants possess strongly reconfigured plastomes attributable to
convergent losses of photosynthesis and housekeeping genes, making them excellent …

Celebrating wobble decoding: Half a century and still much is new

PF Agris, ER Eruysal, A Narendran, VYP Väre… - RNA biology, 2018 - Taylor & Francis
ABSTRACT A simple post-transcriptional modification of tRNA, deamination of adenosine to
inosine at the first, or wobble, position of the anticodon, inspired Francis Crick's Wobble …

Transfer RNAs: diversity in form and function

MD Berg, CJ Brandl - RNA biology, 2021 - Taylor & Francis
As the adaptor that decodes mRNA sequence into protein, the basic aspects of tRNA
structure and function are central to all studies of biology. Yet the complexities of their …

The chemical diversity of RNA modifications

RJ Ontiveros, J Stoute, KF Liu - Biochemical Journal, 2019 - portlandpress.com
Nucleic acid modifications in DNA and RNA ubiquitously exist among all the three kingdoms
of life. This trait significantly broadens the genome diversity and works as an important …