Scientific workflows: moving across paradigms

CS Liew, MP Atkinson, M Galea, TF Ang… - ACM Computing …, 2016 - dl.acm.org
Modern scientific collaborations have opened up the opportunity to solve complex problems
that require both multidisciplinary expertise and large-scale computational experiments …

Workflow-centric research objects: First class citizens in scholarly discourse.

A workflow-centric research object bundles a workflow, the provenance of the results
obtained by its enactment, other digital objects that are relevant for the experiment (papers …

HyperFlow: A model of computation, programming approach and enactment engine for complex distributed workflows

B Balis - Future Generation Computer Systems, 2016 - Elsevier
This paper presents HyperFlow: a model of computation, programming approach and
enactment engine for scientific workflows. Workflow programming in HyperFlow combines a …

BioVeL: a virtual laboratory for data analysis and modelling in biodiversity science and ecology

AR Hardisty, F Bacall, N Beard, MP Balcázar-Vargas… - BMC ecology, 2016 - Springer
Background Making forecasts about biodiversity and giving support to policy relies
increasingly on large collections of data held electronically, and on substantial …

Resource management for bursty streams on multi-tenancy cloud environments

R Tolosana-Calasanz, JÁ Bañares, C Pham… - Future Generation …, 2016 - Elsevier
The number of applications that need to process data continuously over long periods of time
has increased significantly over recent years. The emerging Internet of Things and Smart …

Scientific workflows and provenance: Introduction and research opportunities

V Cuevas-Vicenttín, S Dey, S Köhler, S Riddle… - Datenbank …, 2012 - Springer
Scientific workflows are becoming increasingly popular for compute-intensive and data-
intensive scientific applications. The vision and promise of scientific workflows includes …

Kurator: A Kepler package for data curation workflows

L Dou, G Cao, PJ Morris, RA Morris… - Procedia Computer …, 2012 - Elsevier
Data curation is critical for scientific data digitization, sharing, integration, and use. This
paper presents Kurator, a software package for automating data curation pipelines in the …

Porting adaptive ensemble molecular dynamics workflows to the summit supercomputer

J Ossyra, A Sedova, A Tharrington, F Noé… - … Conference on High …, 2019 - Springer
Molecular dynamics (MD) simulations must take very small (femtosecond) integration steps
in simulation-time to avoid numerical errors. Efficient use of parallel programming models …

Increasing scientific workflow programming productivity with hyperflow

B Balis - 2014 9th Workshop on Workflows in Support of Large …, 2014 - ieeexplore.ieee.org
This paper presents HyperFlow: an approach to workflow programming which combines the
advantages of a declarative workflow description and low-level scripting programming. The …

Towards reliable, performant workflows for streaming-applications on cloud platforms

D Zinn, Q Hart, T McPhillips… - 2011 11th IEEE/ACM …, 2011 - ieeexplore.ieee.org
Scientific workflows are commonplace in eScience applications. Yet, the lack of integrated
support for data models, including streaming data, structured collections and files, is limiting …