PubMed and beyond: biomedical literature search in the age of artificial intelligence
Biomedical research yields vast information, much of which is only accessible through the
literature. Consequently, literature search is crucial for healthcare and biomedicine. Recent …
literature. Consequently, literature search is crucial for healthcare and biomedicine. Recent …
LitCovid: an open database of COVID-19 literature
Since the outbreak of the current pandemic in 2020, there has been a rapid growth of
published articles on COVID-19 and SARS-CoV-2, with about 10 000 new articles added …
published articles on COVID-19 and SARS-CoV-2, with about 10 000 new articles added …
MedCPT: Contrastive Pre-trained Transformers with large-scale PubMed search logs for zero-shot biomedical information retrieval
Motivation Information retrieval (IR) is essential in biomedical knowledge acquisition and
clinical decision support. While recent progress has shown that language model encoders …
clinical decision support. While recent progress has shown that language model encoders …
Large language models in biomedical natural language processing: benchmarks, baselines, and recommendations
Biomedical literature is growing rapidly, making it challenging to curate and extract
knowledge manually. Biomedical natural language processing (BioNLP) techniques that …
knowledge manually. Biomedical natural language processing (BioNLP) techniques that …
BioSentVec: creating sentence embeddings for biomedical texts
Sentence embeddings have become an essential part of today's natural language
processing (NLP) systems, especially together advanced deep learning methods. Although …
processing (NLP) systems, especially together advanced deep learning methods. Although …
Scientific fact-checking: A survey of resources and approaches
The task of fact-checking deals with assessing the veracity of factual claims based on
credible evidence and background knowledge. In particular, scientific fact-checking is the …
credible evidence and background knowledge. In particular, scientific fact-checking is the …
[HTML][HTML] A comparative evaluation of biomedical similar article recommendation
Background Biomedical sciences, with their focus on human health and disease, have
attracted unprecedented attention in the 21st century. The proliferation of biomedical …
attracted unprecedented attention in the 21st century. The proliferation of biomedical …
Enzymes in the cholesterol synthesis pathway: interactomics in the cancer context
P Ershov, L Kaluzhskiy, Y Mezentsev, E Yablokov… - Biomedicines, 2021 - mdpi.com
A global protein interactome ensures the maintenance of regulatory, signaling and structural
processes in cells, but at the same time, aberrations in the repertoire of protein–protein …
processes in cells, but at the same time, aberrations in the repertoire of protein–protein …
BioConceptVec: Creating and evaluating literature-based biomedical concept embeddings on a large scale
A massive number of biological entities, such as genes and mutations, are mentioned in the
biomedical literature. The capturing of the semantic relatedness of biological entities is vital …
biomedical literature. The capturing of the semantic relatedness of biological entities is vital …
[HTML][HTML] Benchmarking effectiveness and efficiency of deep learning models for semantic textual similarity in the clinical domain: validation study
Background Semantic textual similarity (STS) measures the degree of relatedness between
sentence pairs. The Open Health Natural Language Processing (OHNLP) Consortium …
sentence pairs. The Open Health Natural Language Processing (OHNLP) Consortium …