Coalescent Analysis of Phylogenomic Data Confidently Resolves the Species Relationships in the Anopheles gambiae Species Complex
Y Thawornwattana, D Dalquen… - Molecular biology and …, 2018 - academic.oup.com
Deep coalescence and introgression make it challenging to infer phylogenetic relationships
among closely related species that arose through radiative speciation events. Despite …
among closely related species that arose through radiative speciation events. Despite …
ParGenes: a tool for massively parallel model selection and phylogenetic tree inference on thousands of genes
Motivation Coalescent-and reconciliation-based methods are now widely used to infer
species phylogenies from genomic data. They typically use per-gene phylogenies as input …
species phylogenies from genomic data. They typically use per-gene phylogenies as input …
[HTML][HTML] A bird's white-eye view on avian sex chromosome evolution
Chromosomal organization is relatively stable among avian species, especially with regards
to sex chromosomes. Members of the large Sylvioidea clade however have a pair of neo-sex …
to sex chromosomes. Members of the large Sylvioidea clade however have a pair of neo-sex …
Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies
Background New sequencing technologies have lowered financial barriers to whole
genome sequencing, but resulting assemblies are often fragmented and far from 'finished' …
genome sequencing, but resulting assemblies are often fragmented and far from 'finished' …
Cyanobacterial phylogenetic analysis based on phylogenomics approaches render evolutionary diversification and adaptation: an overview of representative orders
Phylogenetic studies based on a definite set of marker genes usually reconstruct
evolutionary relationships among the prokaryotic species. Based on specific target …
evolutionary relationships among the prokaryotic species. Based on specific target …
Two Nested Inversions in the X Chromosome Differentiate the Dominant Malaria Vectors in Europe, Anopheles atroparvus and Anopheles messeae
ES Soboleva, KM Kirilenko, VS Fedorova… - Insects, 2024 - mdpi.com
Simple Summary Anopheles mosquitoes are the only vectors of human malaria, a deadly
disease causing over 500,000 deaths annually, mainly in sub-Saharan Africa. Less than …
disease causing over 500,000 deaths annually, mainly in sub-Saharan Africa. Less than …
Small parsimony for natural genomes in the DCJ-indel model
The Small Parsimony Problem (SPP) aims at finding the gene orders at internal nodes of a
given phylogenetic tree such that the overall genome rearrangement distance along the tree …
given phylogenetic tree such that the overall genome rearrangement distance along the tree …
Physical Mapping of Two Nested Fixed Inversions in the X Chromosome of the Malaria Mosquito Anopheles messeae
ES Soboleva, KM Kirilenko, VS Fedorova… - RECOMB International …, 2023 - Springer
Chromosomal inversions play an important role in genome evolution, speciation and
adaptation of organisms to diverse environments. Mapping and characterization of inversion …
adaptation of organisms to diverse environments. Mapping and characterization of inversion …
The distance and median problems in the single-cut-or-join model with single-gene duplications
Background. In the field of genome rearrangement algorithms, models accounting for gene
duplication lead often to hard problems. For example, while computing the pairwise distance …
duplication lead often to hard problems. For example, while computing the pairwise distance …
Ancestral genome organization as a diagnosis tool for phylogenomics
The reconstruction of the chromosomal organization of ancient genomes has many
applications in comparative and evolutionary genomics. Here we propose a novel …
applications in comparative and evolutionary genomics. Here we propose a novel …