[HTML][HTML] Deep learning in drug discovery: an integrative review and future challenges

H Askr, E Elgeldawi, H Aboul Ella… - Artificial Intelligence …, 2023 - Springer
Recently, using artificial intelligence (AI) in drug discovery has received much attention
since it significantly shortens the time and cost of developing new drugs. Deep learning (DL) …

[HTML][HTML] Comprehensive survey of recent drug discovery using deep learning

J Kim, S Park, D Min, W Kim - International Journal of Molecular Sciences, 2021 - mdpi.com
Drug discovery based on artificial intelligence has been in the spotlight recently as it
significantly reduces the time and cost required for developing novel drugs. With the …

An omics perspective on drug target discovery platforms

J Paananen, V Fortino - Briefings in bioinformatics, 2020 - academic.oup.com
The drug discovery process starts with identification of a disease-modifying target. This
critical step traditionally begins with manual investigation of scientific literature and …

[HTML][HTML] Drug repurposing in oncology: Compounds, pathways, phenotypes and computational approaches for colorectal cancer

P Nowak-Sliwinska, L Scapozza, AR i Altaba - Biochimica et Biophysica …, 2019 - Elsevier
The strategy of using existing drugs originally developed for one disease to treat other
indications has found success across medical fields. Such drug repurposing promises faster …

Lipid-lowering agents: targets beyond PCSK9

RA Hegele, S Tsimikas - Circulation research, 2019 - Am Heart Assoc
Several new or emerging drugs for dyslipidemia owe their existence, in part, to human
genetic evidence, such as observations in families with rare genetic disorders or in …

Connecting chemistry and biology through molecular descriptors

A Fernández-Torras, A Comajuncosa-Creus… - Current Opinion in …, 2022 - Elsevier
Through the representation of small molecule structures as numerical descriptors and the
exploitation of the similarity principle, chemoinformatics has made paramount contributions …

Extending the small-molecule similarity principle to all levels of biology with the Chemical Checker

M Duran-Frigola, E Pauls, O Guitart-Pla… - Nature …, 2020 - nature.com
Small molecules are usually compared by their chemical structure, but there is no unified
analytic framework for representing and comparing their biological activity. We present the …

DrugAI: a multi-view deep learning model for predicting drug–target activating/inhibiting mechanisms

S Zhang, K Yang, Z Liu, X Lai, Z Yang… - Briefings in …, 2023 - academic.oup.com
Understanding the mechanisms of candidate drugs play an important role in drug discovery.
The activating/inhibiting mechanisms between drugs and targets are major types of …

[HTML][HTML] Drug target prediction through deep learning functional representation of gene signatures

H Chen, FJ King, B Zhou, Y Wang, CJ Canedy… - Nature …, 2024 - nature.com
Many machine learning applications in bioinformatics currently rely on matching gene
identities when analyzing input gene signatures and fail to take advantage of preexisting …

De Novo Generation of Chemical Structures of Inhibitor and Activator Candidates for Therapeutic Target Proteins by a Transformer-Based Variational Autoencoder …

Y Matsukiyo, C Yamanaka… - Journal of Chemical …, 2023 - ACS Publications
Deep generative models for molecular generation have been gaining much attention as
structure generators to accelerate drug discovery. However, most previously developed …