Automated image-based tracking and its application in ecology

AI Dell, JA Bender, K Branson, ID Couzin… - Trends in ecology & …, 2014 - cell.com
The behavior of individuals determines the strength and outcome of ecological interactions,
which drive population, community, and ecosystem organization. Bio-logging, such as …

Circuit investigations with open-source miniaturized microscopes: past, present and future

D Aharoni, TM Hoogland - Frontiers in cellular neuroscience, 2019 - frontiersin.org
The ability to simultaneously image the spatiotemporal activity signatures from many
neurons during unrestrained vertebrate behaviors has become possible through the …

Using DeepLabCut for 3D markerless pose estimation across species and behaviors

T Nath, A Mathis, AC Chen, A Patel, M Bethge… - Nature protocols, 2019 - nature.com
Noninvasive behavioral tracking of animals during experiments is critical to many scientific
pursuits. Extracting the poses of animals without using markers is often essential to …

DeepLabCut: markerless pose estimation of user-defined body parts with deep learning

A Mathis, P Mamidanna, KM Cury, T Abe… - Nature …, 2018 - nature.com
Quantifying behavior is crucial for many applications in neuroscience. Videography provides
easy methods for the observation and recording of animal behavior in diverse settings, yet …

Simple Behavioral Analysis (SimBA)–an open source toolkit for computer classification of complex social behaviors in experimental animals

SRO Nilsson, NL Goodwin, JJ Choong, S Hwang… - BioRxiv, 2020 - biorxiv.org
Aberrant social behavior is a core feature of many neuropsychiatric disorders, yet the study
of complex social behavior in freely moving rodents is relatively infrequently incorporated …

Beyond the three-chamber test: toward a multimodal and objective assessment of social behavior in rodents

R Jabarin, S Netser, S Wagner - Molecular Autism, 2022 - Springer
Main In recent years, substantial advances in social neuroscience have been realized,
including the generation of numerous rodent models of autism spectrum disorder. Still, it can …

Automated measurement of mouse social behaviors using depth sensing, video tracking, and machine learning

W Hong, A Kennedy… - Proceedings of the …, 2015 - National Acad Sciences
A lack of automated, quantitative, and accurate assessment of social behaviors in
mammalian animal models has limited progress toward understanding mechanisms …

Application of machine vision systems in aquaculture with emphasis on fish: state‐of‐the‐art and key issues

M Saberioon, A Gholizadeh, P Cisar… - Reviews in …, 2017 - Wiley Online Library
Demands of aquatic products are increasing dramatically during past decades. Also quality
assurance has gradually received more attention by both producers and consumers. Thus …

EthoLoop: automated closed-loop neuroethology in naturalistic environments

A Nourizonoz, R Zimmermann, CLA Ho, S Pellat… - Nature …, 2020 - nature.com
Accurate tracking and analysis of animal behavior is crucial for modern systems
neuroscience. However, following freely moving animals in naturalistic, three-dimensional …

Precision aquaculture: a short review on engineering innovations

F Antonucci, C Costa - Aquaculture International, 2020 - Springer
Aquaculture is presented as a sustainable alternative to the consumption of wild fish, for
example, reducing inputs (such as feed), optimizing outputs, and reducing pollution …