[HTML][HTML] Plant microbiome structure and benefits for sustainable agriculture

LF Santos, FL Olivares - Current Plant Biology, 2021 - Elsevier
Plants are colonized by a multitude of micro-organisms, collectively called “microbiome,”
and which play essential roles in the niches they inhabit. The potential of the microbiome …

Unboxing the black box—one step forward to understand the soil microbiome: a systematic review

A Mishra, L Singh, D Singh - Microbial ecology, 2023 - Springer
Soil is one of the most important assets of the planet Earth, responsible for maintaining the
biodiversity and managing the ecosystem services for both managed and natural …

[HTML][HTML] Microbiome as a key player in sustainable agriculture and human health

J Suman, A Rakshit, SD Ogireddy, S Singh… - Frontiers in Soil …, 2022 - frontiersin.org
The aggregate of microorganisms in the soil environment is a microbiome that emerged as a
vital component of sustainable agriculture in the recent past. These beneficial …

[HTML][HTML] Data analysis for 16S microbial profiling from different benchtop sequencing platforms

VS Pylro, LFW Roesch, DK Morais, IM Clark… - Journal of …, 2014 - Elsevier
Progress in microbial ecology is confounded by problems when evaluating results from
different sequencing methodologies. Contrary to existing expectations, here we demonstrate …

[HTML][HTML] Exploring interactions of plant microbiomes

FD Andreote, T Gumiere, A Durrer - Scientia agrícola, 2014 - SciELO Brasil
A plethora of microbial cells is present in every gram of soil, and microbes are found
extensively in plant and animal tissues. The mechanisms governed by microorganisms in …

Back to the future of soil metagenomics

J Nesme, W Achouak, SN Agathos, M Bailey… - Frontiers in …, 2016 - frontiersin.org
Direct extraction and characterization of microbial community DNA through PCR amplicon
surveys and metagenomics has revolutionized the study of environmental microbiology and …

Development of an analysis pipeline characterizing multiple hypervariable regions of 16S rRNA using mock samples

JJ Barb, AJ Oler, HS Kim, N Chalmers, GR Wallen… - PloS one, 2016 - journals.plos.org
Objectives There is much speculation on which hypervariable region provides the highest
bacterial specificity in 16S rRNA sequencing. The optimum solution to prevent bias and to …

Canola root–associated microbiomes in the Canadian prairies

CY Lay, TH Bell, C Hamel, KN Harker, R Mohr… - Frontiers in …, 2018 - frontiersin.org
Canola is one of the most economically important crops in Canada, and the root and
rhizosphere microbiomes of a canola plant likely impact its growth and nutrient uptake. The …

Vineyard under-vine floor management alters soil microbial composition, while the fruit microbiome shows no corresponding shifts

MY Chou, J Vanden Heuvel, TH Bell, K Panke-Buisse… - Scientific reports, 2018 - nature.com
The microbiome of a vineyard may play a critical role in fruit development, and
consequently, may impact quality properties of grape and wine. Vineyard management …

Toward a predictive understanding of Earth's microbiomes to address 21st century challenges

MJ Blaser, ZG Cardon, MK Cho, JL Dangl, TJ Donohue… - MBio, 2016 - Am Soc Microbiol
Microorganisms have shaped our planet and its inhabitants for over 3.5 billion years.
Humankind has had a profound influence on the biosphere, manifested as global climate …