Genomic selection and its research progress in aquaculture breeding

H Song, T Dong, X Yan, W Wang, Z Tian… - Reviews in …, 2023 - Wiley Online Library
Since its introduction in 2001, genomic selection (GS) has progressed rapidly. As a research
and application hot topic, GS has led to a revolution in the field of animal and plant breeding …

Recent advances in crustacean genomics and their potential application in aquaculture

J Yuan, Y Yu, X Zhang, S Li, J Xiang… - Reviews in …, 2023 - Wiley Online Library
Genomic resources are increasingly being used to improve the production efficiency and
profitability of aquaculture. Crustaceans are a large group of invertebrates that …

An atlas of regulatory elements in chicken: A resource for chicken genetics and genomics

Z Pan, Y Wang, M Wang, Y Wang, X Zhu, S Gu… - Science …, 2023 - science.org
A comprehensive characterization of regulatory elements in the chicken genome across
tissues will have substantial impacts on both fundamental and applied research. Here, we …

[HTML][HTML] Enhancer-promoter interaction maps provide insights into skeletal muscle-related traits in pig genome

J Li, Y Xiang, L Zhang, X Qi, Z Zheng, P Zhou, Z Tang… - BMC biology, 2022 - Springer
Background Gene expression programs are intimately linked to the interplay of active cis
regulatory elements mediated by chromatin contacts and associated RNAs. Genome-wide …

[HTML][HTML] Genomic prediction with whole-genome sequence data in intensely selected pig lines

R Ros-Freixedes, M Johnsson, A Whalen… - Genetics Selection …, 2022 - Springer
Background Early simulations indicated that whole-genome sequence data (WGS) could
improve the accuracy of genomic predictions within and across breeds. However, empirical …

[HTML][HTML] Runs of homozygosity revealed reproductive traits of Hu sheep

Y Li, Z Chen, Y Fang, C Cao, Z Zhang, Y Pan, Q Wang - Genes, 2022 - mdpi.com
Hu sheep, a famous breed in the Taihu Basin, has the advantages of non-seasonal estrus,
multiple fetuses, coarse feeding tolerance, and suitability for house feeding. Runs of …

[HTML][HTML] 全基因组SNP 分型技术在畜禽遗传育种研究中的应用

刘继强, 郝晓东, 武丽娜, 廖诗莹, 冯羿方, 弥世荣… - 畜牧兽医学报, 2022 - xml-data.org
随着畜禽资源分子鉴定, 物种进化, 全基因组育种等热点领域的逐渐兴起, 准确的全基因组SNP
分型成为了畜禽基因组研究的关键. 基因芯片, 重测序, 简化基因组测序及靶向捕获测序等全 …

[HTML][HTML] Genomic prediction based on selective linkage disequilibrium pruning of low-coverage whole-genome sequence variants in a pure Duroc population

D Zhu, Y Zhao, R Zhang, H Wu, G Cai, Z Wu… - Genetics Selection …, 2023 - Springer
Background Although the accumulation of whole-genome sequencing (WGS) data has
accelerated the identification of mutations underlying complex traits, its impact on the …

[HTML][HTML] Chicken chromatin accessibility atlas accelerates epigenetic annotation of birds and gene fine-mapping associated with growth traits

XN Zhu, YZ Wang, C Li, HY Wu, R Zhang… - Zoological …, 2023 - ncbi.nlm.nih.gov
The development of epigenetic maps, such as the ENCODE project in humans, provides
resources for gene regulation studies and a reference for research of disease-related …

[HTML][HTML] Assessment of the performance of different imputation methods for low-coverage sequencing in Holstein cattle

J Teng, C Zhao, D Wang, Z Chen, H Tang, J Li… - Journal of Dairy …, 2022 - Elsevier
Low-coverage sequencing (LCS) followed by imputation has been proposed as a cost-
effective genotyping approach for obtaining genotypes of whole-genome variants …