The tRNA identity landscape for aminoacylation and beyond

R Giegé, G Eriani - Nucleic Acids Research, 2023 - academic.oup.com
Abstract tRNAs are key partners in ribosome-dependent protein synthesis. This process is
highly dependent on the fidelity of tRNA aminoacylation by aminoacyl-tRNA synthetases …

The life and times of a tRNA

EM Phizicky, AK Hopper - RNA, 2023 - rnajournal.cshlp.org
The study of eukaryotic tRNA processing has given rise to an explosion of new information
and insights in the last several years. We now have unprecedented knowledge of each step …

On the expanding roles of tRNA fragments in modulating cell behavior

R Magee, I Rigoutsos - Nucleic acids research, 2020 - academic.oup.com
The fragments that derive from transfer RNAs (tRNAs) are an emerging category of
regulatory RNAs. Known as tRFs, these fragments were reported for the first time only a …

tRNA biology charges to the front

EM Phizicky, AK Hopper - Genes & development, 2010 - genesdev.cshlp.org
tRNA biology has come of age, revealing an unprecedented level of understanding and
many unexpected discoveries along the way. This review highlights new findings on the …

Transfer RNA modifications: nature's combinatorial chemistry playground

JE Jackman, JD Alfonzo - Wiley Interdisciplinary Reviews: RNA, 2013 - Wiley Online Library
Following synthesis, tRNAs are peppered by numerous chemical modifications which may
differentially affect a tRNA's structure and function. Although modifications affecting the …

Characterizing expression and processing of precursor and mature human tRNAs by hydro-tRNAseq and PAR-CLIP

T Gogakos, M Brown, A Garzia, C Meyer, M Hafner… - Cell reports, 2017 - cell.com
The participation of tRNAs in fundamental aspects of biology and disease necessitates an
accurate, experimentally confirmed annotation of tRNA genes and curation of tRNA …

Biochemical and genetic analysis of the yeast proteome with a movable ORF collection

DM Gelperin, MA White, ML Wilkinson… - Genes & …, 2005 - genesdev.cshlp.org
Functional analysis of the proteome is an essential part of genomic research. To facilitate
different proteomic approaches, a MORF (moveable ORF) library of 5854 yeast expression …

Transfer RNAs: diversity in form and function

MD Berg, CJ Brandl - RNA biology, 2021 - Taylor & Francis
As the adaptor that decodes mRNA sequence into protein, the basic aspects of tRNA
structure and function are central to all studies of biology. Yet the complexities of their …

Transfer RNA Post-Transcriptional Processing, Turnover, and Subcellular Dynamics in the Yeast Saccharomyces cerevisiae

AK Hopper - Genetics, 2013 - academic.oup.com
Transfer RNAs (tRNAs) are essential for protein synthesis. In eukaryotes, tRNA biosynthesis
employs a specialized RNA polymerase that generates initial transcripts that must be …

Degradation of several hypomodified mature tRNA species in Saccharomyces cerevisiae is mediated by Met22 and the 5′–3′ exonucleases Rat1 and Xrn1

I Chernyakov, JM Whipple, L Kotelawala… - Genes & …, 2008 - genesdev.cshlp.org
Mature tRNA is normally extensively modified and extremely stable. Recent evidence
suggests that hypomodified mature tRNA in yeast can undergo a quality control check by a …