Diversity of the biosynthesis pathway for threonylcarbamoyladenosine (t6A), a universal modification of tRNA

PC Thiaville, D Iwata-Reuyl, V de Crécy-Lagard - RNA biology, 2014 - Taylor & Francis
The tRNA modification field has a rich literature covering biochemical analysis going back
more than 40 years, but many of the corresponding genes were only identified in the last …

The binary protein-protein interaction landscape of Escherichia coli

SV Rajagopala, P Sikorski, A Kumar, R Mosca… - Nature …, 2014 - nature.com
Efforts to map the Escherichia coli interactome have identified several hundred
macromolecular complexes, but direct binary protein-protein interactions (PPIs) have not …

High‐throughput cloning and expression library creation for functional proteomics

F Festa, J Steel, X Bian, J Labaer - Proteomics, 2013 - Wiley Online Library
The study of protein function usually requires the use of a cloned version of the gene for
protein expression and functional assays. This strategy is particularly important when the …

Heterologous expression of membrane proteins: choosing the appropriate host

F Bernaudat, A Frelet-Barrand, N Pochon, S Dementin… - PloS one, 2011 - journals.plos.org
Background Membrane proteins are the targets of 50% of drugs, although they only
represent 1% of total cellular proteins. The first major bottleneck on the route to their …

Protein domains of unknown function are essential in bacteria

NF Goodacre, DL Gerloff, P Uetz - MBio, 2014 - Am Soc Microbiol
More than 20% of all protein domains are currently annotated as “domains of unknown
function”(DUFs). About 2,700 DUFs are found in bacteria compared with just over 1,500 in …

A role for the universal Kae1/Qri7/YgjD (COG0533) family in tRNA modification

B El Yacoubi, I Hatin, C Deutsch, T Kahveci… - The EMBO …, 2011 - embopress.org
The YgjD/Kae1 family (COG0533) has been on the top‐10 list of universally conserved
proteins of unknown function for over 5 years. It has been linked to DNA maintenance in …

RsfA (YbeB) proteins are conserved ribosomal silencing factors

R Häuser, M Pech, J Kijek, H Yamamoto, B Titz… - PLoS …, 2012 - journals.plos.org
The YbeB (DUF143) family of uncharacterized proteins is encoded by almost all bacterial
and eukaryotic genomes but not archaea. While they have been shown to be associated …

A comparison of two-hybrid approaches for detecting protein–protein interactions

J Mehla, JH Caufield, N Sakhawalkar, P Uetz - Methods in enzymology, 2017 - Elsevier
Two-hybrid systems are one of the most popular, preferred, cost effective, and scalable in
vivo genetic approaches for screening protein–protein interactions. A number of variants of …

A second-generation protein–protein interaction network of Helicobacter pylori

R Häuser, A Ceol, SV Rajagopala, R Mosca… - Molecular & cellular …, 2014 - ASBMB
Helicobacter pylori infections cause gastric ulcers and play a major role in the development
of gastric cancer. In 2001, the first protein interactome was published for this species …

Overexpression approaches to advance understanding of Candida albicans

LS Rai, L van Wijlick, M Chauvel… - Molecular …, 2022 - Wiley Online Library
Candida albicans is an opportunistic fungal pathogen that is responsible for infections linked
to high mortality. Loss‐of‐function approaches, taking advantage of gene knockouts or …