Revisiting the Crabtree/Warburg effect in a dynamic perspective: a fitness advantage against sugar-induced cell death

E de Alteriis, F Cartenì, P Parascandola, J Serpa… - Cell Cycle, 2018 - Taylor & Francis
The mechanisms behind the Warburg effect in mammalian cells, as well as for the similar
Crabtree effect in the yeast Saccharomyces cerevisiae, are still a matter of debate: why do …

[HTML][HTML] Cellular adaptation takes advantage of atavistic regression programs during carcinogenesis

D Gnocchi, D Nikolic, RR Paparella, C Sabbà… - Cancers, 2023 - mdpi.com
Simple Summary Cancer can be considered the epidemic of the third millennium, and recent
projections paint a worrying scenario for the coming decades. Knowledge about the causes …

An enzyme‐coated metal–organic framework shell for synthetically adaptive cell survival

K Liang, JJ Richardson, CJ Doonan… - Angewandte Chemie …, 2017 - Wiley Online Library
A bioactive synthetic porous shell was engineered to enable cells to survive in an
oligotrophic environment. Eukaryotic cells (yeast) were firstly coated with a β‐galactosidase …

Ultrahigh performance liquid chromatography− tandem mass spectrometry method for fast and robust quantification of anionic and aromatic metabolites

JM Buescher, S Moco, U Sauer, N Zamboni - Analytical chemistry, 2010 - ACS Publications
Quantification of metabolites is of pivotal relevance in biology, where it complements more
established omics techniques such as transcriptomics and proteomics. Here, we present a …

Transcriptional regulation is insufficient to explain substrate‐induced flux changes in Bacillus subtilis

V Chubukov, M Uhr, L Le Chat, RJ Kleijn… - Molecular systems …, 2013 - embopress.org
One of the key ways in which microbes are thought to regulate their metabolism is by
modulating the availability of enzymes through transcriptional regulation. However, the …

Proteomic and physiological analyses of wheat seeds exposed to copper and iron nanoparticles

F Yasmeen, NI Raja, A Razzaq, S Komatsu - Biochimica et Biophysica Acta …, 2017 - Elsevier
To elucidate the role of Cu and Fe NPs on the yield of wheat varieties, a gel-free proteomic
technique was used. NPs were synthesized and characterized through zeta potential, EDX …

[HTML][HTML] Metabolic effects of influenza virus infection in cultured animal cells: Intra-and extracellular metabolite profiling

JB Ritter, AS Wahl, S Freund, Y Genzel, U Reichl - BMC systems biology, 2010 - Springer
Background Many details in cell culture-derived influenza vaccine production are still poorly
understood and approaches for process optimization mainly remain empirical. More insights …

[HTML][HTML] Full humanization of the glycolytic pathway in Saccharomyces cerevisiae

FJ Boonekamp, E Knibbe, MA Vieira-Lara, M Wijsman… - Cell Reports, 2022 - cell.com
Although transplantation of single genes in yeast plays a key role in elucidating gene
functionality in metazoans, technical challenges hamper humanization of full pathways and …

Tradeoff between enzyme and metabolite efficiency maintains metabolic homeostasis upon perturbations in enzyme capacity

SM Fendt, JM Buescher, F Rudroff, P Picotti… - Molecular systems …, 2010 - embopress.org
What is the relationship between enzymes and metabolites, the two major constituents of
metabolic networks? We propose three alternative relationships between enzyme capacity …

Measuring enzyme activities under standardized in vivo‐like conditions for systems biology

K Van Eunen, J Bouwman, P Daran‐Lapujade… - The FEBS …, 2010 - Wiley Online Library
Realistic quantitative models require data from many laboratories. Therefore,
standardization of experimental systems and assay conditions is crucial. Moreover …