Listeria monocytogenes: towards a complete picture of its physiology and pathogenesis

L Radoshevich, P Cossart - Nature Reviews Microbiology, 2018 - nature.com
Listeria monocytogenes is a food-borne pathogen responsible for a disease called
listeriosis, which is potentially lethal in immunocompromised individuals. This bacterium, first …

Single-cell RNA-seq: advances and future challenges

AE Saliba, AJ Westermann, SA Gorski… - Nucleic acids …, 2014 - academic.oup.com
Phenotypically identical cells can dramatically vary with respect to behavior during their
lifespan and this variation is reflected in their molecular composition such as the …

Chromatin state dynamics during blood formation

D Lara-Astiaso, A Weiner, E Lorenzo-Vivas, I Zaretsky… - science, 2014 - science.org
Chromatin modifications are crucial for development, yet little is known about their dynamics
during differentiation. Hematopoiesis provides a well-defined model to study chromatin state …

Dual RNA-seq of pathogen and host

AJ Westermann, SA Gorski, J Vogel - Nature Reviews Microbiology, 2012 - nature.com
A comprehensive understanding of host–pathogen interactions requires a knowledge of the
associated gene expression changes in both the pathogen and the host. Traditional, probe …

Rfam 11.0: 10 years of RNA families

SW Burge, J Daub, R Eberhardt, J Tate… - Nucleic acids …, 2013 - academic.oup.com
The Rfam database (available via the website at http://rfam. sanger. ac. uk and through our
mirror at http://rfam. janelia. org) is a collection of non-coding RNA families, primarily RNAs …

Global transcriptional start site mapping using differential RNA sequencing reveals novel antisense RNAs in Escherichia coli

MK Thomason, T Bischler, SK Eisenbart… - Journal of …, 2015 - Am Soc Microbiol
While the model organism Escherichia coli has been the subject of intense study for
decades, the full complement of its RNAs is only now being examined. Here we describe a …

[PDF][PDF] Genome-wide mapping of transcriptional start sites defines an extensive leaderless transcriptome in Mycobacterium tuberculosis

T Cortes, OT Schubert, G Rose, KB Arnvig, I Comas… - Cell reports, 2013 - cell.com
Deciphering physiological changes that mediate transition of Mycobacterium tuberculosis
between replicating and nonreplicating states is essential to understanding how the …

[HTML][HTML] High-Resolution Transcriptome Maps Reveal Strain-Specific Regulatory Features of Multiple Campylobacter jejuni Isolates

G Dugar, A Herbig, KU Förstner, N Heidrich… - PLoS …, 2013 - journals.plos.org
Campylobacter jejuni is currently the leading cause of bacterial gastroenteritis in humans.
Comparison of multiple Campylobacter strains revealed a high genetic and phenotypic …

[HTML][HTML] Metagenomics for pathogen detection in public health

RR Miller, V Montoya, JL Gardy, DM Patrick, P Tang - Genome medicine, 2013 - Springer
Traditional pathogen detection methods in public health infectious disease surveillance rely
upon the identification of agents that are already known to be associated with a particular …

Fucoidan and galactooligosaccharides ameliorate high-fat diet–induced dyslipidemia in rats by modulating the gut microbiota and bile acid metabolism

Q Chen, M Liu, P Zhang, S Fan, J Huang, S Yu… - Nutrition, 2019 - Elsevier
Objectives Dyslipidemia is an important risk factor for cardiovascular diseases. Fucoidan
(FUC) is a polysaccharide extracted from brown marine algae with various biological …