Current strategies of polyploid plant genome sequence assembly

M Kyriakidou, HH Tai, NL Anglin, D Ellis… - Frontiers in plant …, 2018 - frontiersin.org
Polyploidy or duplication of an entire genome occurs in the majority of angiosperms. The
understanding of polyploid genomes is important for the improvement of those crops, which …

Sugarcane ratooning ability: research status, shortcomings, and prospects

F Xu, Z Wang, G Lu, R Zeng, Y Que - Biology, 2021 - mdpi.com
Simple Summary Sugarcane ratooning ability is directly related to sugarcane production
costs and planting benefits. There are several questions within the field that we have …

TALEN‐mediated targeted mutagenesis of more than 100 COMT copies/alleles in highly polyploid sugarcane improves saccharification efficiency without …

B Kannan, JH Jung, GW Moxley… - Plant biotechnology …, 2018 - Wiley Online Library
Sugarcane is the world's most efficient feedstock for commercial production of bioethanol
due to its superior biomass production and accumulation of sucrose in stems. Integrating first …

Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop

GM Souza, MA Van Sluys, CG Lembke, H Lee… - …, 2019 - academic.oup.com
Background Sugarcane cultivars are polyploid interspecific hybrids of giant genomes,
typically with 10–13 sets of chromosomes from 2 Saccharum species. The ploidy, hybridity …

The challenge of analyzing the sugarcane genome

PP Thirugnanasambandam, NV Hoang… - Frontiers in plant …, 2018 - frontiersin.org
Reference genome sequences have become key platforms for genetics and breeding of the
major crop species. Sugarcane is probably the largest crop produced in the world (in weight …

Transgene-free genome editing for biotic and abiotic stress resistance in sugarcane: prospects and challenges

S Surya Krishna, SR Harish Chandar, M Ravi… - Agronomy, 2023 - mdpi.com
Sugarcane (Saccharum spp.) is one of the most valuable food and industrial crops. Its
production is constrained due to major biotic (fungi, bacteria, viruses and insect pests) and …

Genome assembly of six polyploid potato genomes

M Kyriakidou, NL Anglin, D Ellis, HH Tai, MV Strömvik - Scientific data, 2020 - nature.com
Genome assembly of polyploid plant genomes is a laborious task as they contain more than
two copies of the genome, are often highly heterozygous with a high level of repetitive DNA …

Genomic approaches for studying crop evolution

M Schreiber, N Stein, M Mascher - Genome biology, 2018 - Springer
Understanding how crop plants evolved from their wild relatives and spread around the
world can inform about the origins of agriculture. Here, we review how the rapid …

Amino acid and carbohydrate metabolism are coordinated to maintain energetic balance during drought in sugarcane

AL Diniz, DIR da Silva, CG Lembke… - International Journal of …, 2020 - mdpi.com
The ability to expand crop plantations without irrigation is a major goal to increase
agriculture sustainability. To achieve this end, we need to understand the mechanisms that …

An updated overview on insights into sugarcane genome editing via CRISPR/Cas9 for sustainable production

SH Hussin, X Liu, C Li, M Diaby, GH Jatoi, R Ahmed… - Sustainability, 2022 - mdpi.com
Sugarcane crop constitutes one of the most vital sources of sugar and bioenergy globally;
however, higher level of polyploidy makes its genome editing an intricate task. Recently …