Protein-ligand docking in the new millennium–a retrospective of 10 years in the field

SF Sousa, AJM Ribeiro, JTS Coimbra… - Current medicinal …, 2013 - ingentaconnect.com
Protein-ligand docking is currently an important tool in drug discovery efforts and an active
area of research that has been the subject of important developments over the last decade …

[HTML][HTML] In silico methods for design of biological therapeutics

A Roy, S Nair, N Sen, N Soni, MS Madhusudhan - Methods, 2017 - Elsevier
It has been twenty years since the first rationally designed small molecule drug was
introduced into the market. Since then, we have progressed from designing small molecules …

[图书][B] Geometric modeling and mesh generation from scanned images

YJ Zhang - 2018 - taylorfrancis.com
Cutting-Edge Techniques to Better Analyze and Predict Complex Physical Phenomena
Geometric Modeling and Mesh Generation from Scanned Images shows how to integrate …

Octopus-man: Qos-driven task management for heterogeneous multicores in warehouse-scale computers

V Petrucci, MA Laurenzano, J Doherty… - 2015 IEEE 21st …, 2015 - ieeexplore.ieee.org
Heterogeneous multicore architectures have the potential to improve energy efficiency by
integrating power-efficient wimpy cores with high-performing brawny cores. However, it is an …

Three-dimensional compound comparison methods and their application in drug discovery

WH Shin, X Zhu, MG Bures, D Kihara - Molecules, 2015 - mdpi.com
Virtual screening has been widely used in the drug discovery process. Ligand-based virtual
screening (LBVS) methods compare a library of compounds with a known active ligand. Two …

Geometric detection algorithms for cavities on protein surfaces in molecular graphics: a survey

T Simões, D Lopes, S Dias, F Fernandes… - Computer graphics …, 2017 - Wiley Online Library
Detecting and analysing protein cavities provides significant information about active sites
for biological processes (eg protein–protein or protein–ligand binding) in molecular graphics …

[HTML][HTML] Detection of resin-rich areas for statistical analysis of fiber-reinforced polymer composites

X Li, S Shonkwiler, S McMains - Composites Part B: Engineering, 2021 - Elsevier
Resin-rich areas (aka resin-rich zones or resin pockets) are a common phenomenon in fiber-
reinforced polymer (FRP) composites that significantly impact composite material properties …

Volumetric properties of hydrated peptides: Voronoi–Delaunay analysis of molecular simulation runs

VP Voloshin, NN Medvedev, MN Andrews… - The Journal of …, 2011 - ACS Publications
The study of hydration, folding, and interaction of proteins by volumetric measurements has
been promoted by recent advances in the development of highly sensitive instrumentations …

Molecular surfaces on proteins via beta shapes

J Ryu, R Park, DS Kim - Computer-Aided Design, 2007 - Elsevier
A protein consists of linearly combined amino acids via peptide bonds, and an amino acid
consists of atoms. It is known that the geometric structure of a protein is the primary factor …

Three-dimensional beta-shapes and beta-complexes via quasi-triangulation

DS Kim, Y Cho, K Sugihara, J Ryu, D Kim - Computer-Aided Design, 2010 - Elsevier
The proximity and topology among particles are often the most important factor for
understanding the spatial structure of particles. Reasoning the morphological structure of …