Using genomics to track global antimicrobial resistance

RS Hendriksen, V Bortolaia, H Tate, GH Tyson… - Frontiers in public …, 2019 - frontiersin.org
The recent advancements in rapid and affordable DNA sequencing technologies have
revolutionized diagnostic microbiology and microbial surveillance. The availability of …

Machine learning for the study of plankton and marine snow from images

JO Irisson, SD Ayata, DJ Lindsay… - Annual Review of …, 2022 - annualreviews.org
Quantitative imaging instruments produce a large number of images of plankton and marine
snow, acquired in a controlled manner, from which the visual characteristics of individual …

Dynamic consent: a patient interface for twenty-first century research networks

J Kaye, EA Whitley, D Lund, M Morrison… - European journal of …, 2015 - nature.com
Biomedical research is being transformed through the application of information
technologies that allow ever greater amounts of data to be shared on an unprecedented …

Diversity and inclusion in genomic research: why the uneven progress?

AR Bentley, S Callier, CN Rotimi - Journal of community genetics, 2017 - Springer
Conducting genomic research in diverse populations has led to numerous advances in our
understanding of human history, biology, and health disparities, in addition to discoveries of …

Clinical decision support systems for improving diagnostic accuracy and achieving precision medicine

C Castaneda, K Nalley, C Mannion… - Journal of clinical …, 2015 - Springer
As research laboratories and clinics collaborate to achieve precision medicine, both
communities are required to understand mandated electronic health/medical record …

Future of DNA-based insect monitoring

PYS Chua, SJ Bourlat, C Ferguson, P Korlevic, L Zhao… - Trends in Genetics, 2023 - cell.com
Insects are crucial for ecosystem health but climate change and pesticide use are driving
massive insect decline. To mitigate this loss, we need new and effective monitoring …

Routes for breaching and protecting genetic privacy

Y Erlich, A Narayanan - Nature Reviews Genetics, 2014 - nature.com
We are entering an era of ubiquitous genetic information for research, clinical care and
personal curiosity. Sharing these data sets is vital for progress in biomedical research …

Sequenceserver: a modern graphical user interface for custom BLAST databases

A Priyam, BJ Woodcroft, V Rai, I Moghul… - Molecular biology …, 2019 - academic.oup.com
Comparing newly obtained and previously known nucleotide and amino-acid sequences
underpins modern biological research. BLAST is a well-established tool for such …

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

KR Bradnam, JN Fass, A Alexandrov, P Baranay… - …, 2013 - academic.oup.com
Background The process of generating raw genome sequence data continues to become
cheaper, faster, and more accurate. However, assembly of such data into high-quality …

What can exome sequencing do for you?

J Majewski, J Schwartzentruber, E Lalonde… - Journal of medical …, 2011 - jmg.bmj.com
Recent advances in next-generation sequencing technologies have brought a paradigm
shift in how medical researchers investigate both rare and common human disorders. The …