Cyanine dye–DNA interactions: intercalation, groove binding, and aggregation

BA Armitage - DNA Binders and Related Subjects: -/-, 2005 - Springer
The cyanine dyes are among the oldest classes of synthetic compounds but continue to find
applications in a variety of fields. In many cases, the dyes act as fluorescent labels for …

[HTML][HTML] Polymethine dyes as spectral-fluorescent probes for biomacromolecules

AS Tatikolov - Journal of Photochemistry and Photobiology C …, 2012 - Elsevier
It is known that polymethine dyes (PD) can form complexes with biomacromolecules, in
which, as a rule, fluorescence buildup is observed. In addition, PD possess a unique …

Stable fluorescent complexes of double-stranded DNA with bis-intercalating asymmetric cyanine dyes: properties and applications

HS Rye, S Yue, DE Wemmer, MA Quesada… - Nucleic acids …, 1992 - academic.oup.com
The synthesis, proof of structure, and the absorption and fluorescence properties of two new
unsymmetrical cyanine dyes, thiazole orange dimer (TOTO; 1, 1′-(4, 4, 7, 7-tetramethyl-4, 7 …

Fluid control structures in microfluidic devices

RA Mathies, WH Grover, A Skelley, E Lagally… - US Patent …, 2008 - Google Patents
Methods and apparatus for implementing microfluidic analysis devices are provided. A
monolithic elastomer membrane associated with an integrated pneumatic manifold allows …

Photophysical Properties of Fluorescent DNA‐dyes Bound to Single‐and Double‐stranded DNA in Aqueous Buffered Solution¶

G Cosa, KS Focsaneanu, JRN McLean… - Photochemistry and …, 2001 - Wiley Online Library
The absorption and fluorescence spectra, fluorescence quantum yields, lifetimes and time‐
resolved fluorescence spectra are reported for nine different fluorescent DNA‐dyes. The …

Microfabricated integrated DNA analysis system

RA Mathies, R Blazej, C Liu, P Kumaresan… - US Patent …, 2010 - Google Patents
Methods and apparatus for genome analysis are provided. A microfabricated structure
including a microfluidic distribu tion channel is configured to distribute microreactor …

DNA sequencing using capillary array electrophoresis

XC Huang, MA Quesada, RA Mathies - Analytical chemistry, 1992 - ACS Publications
A DNA sequencing method is presented that utilizes capillary array electrophoresis, two-
color fluorescence detection, and a two-dye labeling protocol. SangerDNA sequencing …

Fluorometric assay using dimeric dyes for double-and single-stranded DNA and RNA with picogram sensitivity

HS Rye, JM Dabora, MA Quesada, RA Mathies… - Analytical …, 1993 - Elsevier
Thiazole orange homodimer (TOTO; 1, 1′-(4, 4, 7, 7-tetramethyl-4, 7-
diazaundecamethylene)-bis-4-[3-methyl-2, 3-dihydro-(benzo-1, 3-thiazole)-2-methylidene] …

Specific high-affinity binding of thiazole orange to triplex and G-quadruplex DNA

I Lubitz, D Zikich, A Kotlyar - Biochemistry, 2010 - ACS Publications
Interaction of Thiazole Orange (TO) with double-, triple-, and quadruple-stranded forms of
DNA was studied. We have demonstrated by UV− vis absorption, circular dichroism (CD) …

DNA sequencing based on intrinsic molecular charges

T Sakata, Y Miyahara - Angewandte Chemie International …, 2006 - Wiley Online Library
Gene functional analyses have proceeded remarkably in the fields of molecular biology,
pharmacogenomics, and clinical research, on the basis of completion of the decoding of the …