Reproducible computational research (RCR) is the keystone of the scientific method for in
silico analyses, packaging the transformation of raw data to published results. In addition to …

Abstract The SIB Swiss Institute of Bioinformatics (https://www. sib. swiss) creates, maintains
and disseminates a portfolio of reliable and state-of-the-art bioinformatics services and …

Background The automation of data analysis in the form of scientific workflows has become
a widely adopted practice in many fields of research. Computationally driven data-intensive …

The FAIR Guiding Principles, published in 2016, aim to improve the findability, accessibility,
interoperability and reusability of digital research objects for both humans and machines …

High-throughput data production technologies, particularly 'next-generation'DNA
sequencing, have ushered in widespread and disruptive changes to biomedical research …

Abstract The Alliance of Genome Resources (the Alliance) is a combined effort of 7
knowledgebase projects: Saccharomyces Genome Database, WormBase, FlyBase, Mouse …

Software is a critical part of modern research and yet there is little support across the
scholarly ecosystem for its acknowledgement and citation. Inspired by the activities of the …

The primary problem with the explosion of biomedical datasets is not the data, not
computational resources, and not the required storage space, but the general lack of trained …

Abstract The Eukaryotic Pathogen Genomics Database Resource (EuPathDB,
http://eupathdb. org) is a collection of databases covering 170+ eukaryotic pathogens …

Millions of transcriptome samples were generated by the Library of Integrated Network-
based Cellular Signatures (LINCS) program. When these data are processed into …