Pathogen typing in the genomics era: MLST and the future of molecular epidemiology
M Pérez-Losada, P Cabezas, E Castro-Nallar… - Infection, Genetics and …, 2013 - Elsevier
Multi-locus sequence typing (MLST) is a high-resolution genetic typing approach to identify
species and strains of pathogens impacting human health, agriculture (animals and plants) …
species and strains of pathogens impacting human health, agriculture (animals and plants) …
Statistical inferences in phylogeography
R Nielsen, MA Beaumont - Molecular ecology, 2009 - Wiley Online Library
In conventional phylogeographic studies, historical demographic processes are elucidated
from the geographical distribution of individuals represented on an inferred gene tree …
from the geographical distribution of individuals represented on an inferred gene tree …
[PDF][PDF] POPART: full-feature software for haplotype network construction.
popart: full‐feature software for haplotype network construction Page 1 APPLICATION
POPART: full-feature software for haplotype network construction Jessica W. Leigh* and David …
POPART: full-feature software for haplotype network construction Jessica W. Leigh* and David …
Guidelines for DNA taxonomy, with a focus on the meiofauna
Describing biological diversity is a challenging endeavour, especially for the small, cryptic
animals that make up the meiofauna. The field of DNA taxonomy, ie, the use of DNA to …
animals that make up the meiofauna. The field of DNA taxonomy, ie, the use of DNA to …
The performance of phylogenetic algorithms in estimating haplotype genealogies with migration
W Salzburger, GB Ewing, A Von Haeseler - Molecular ecology, 2011 - Wiley Online Library
Genealogies estimated from haplotypic genetic data play a prominent role in various
biological disciplines in general and in phylogenetics, population genetics and …
biological disciplines in general and in phylogenetics, population genetics and …
[HTML][HTML] Worldwide forest surveys reveal forty-three new species in Phytophthora major Clade 2 with fundamental implications for the evolution and biogeography of …
T Jung, I Milenković, Y Balci, J Janoušek… - Studies in …, 2024 - ncbi.nlm.nih.gov
During 25 surveys of global Phytophthora diversity, conducted between 1998 and 2020, 43
new species were detected in natural ecosystems and, occasionally, in nurseries and …
new species were detected in natural ecosystems and, occasionally, in nurseries and …
Phylogeography of the Bothrops jararaca complex (Serpentes: Viperidae): past fragmentation and island colonization in the Brazilian Atlantic Forest
FG Grazziotin, M Monzel, S Echeverrigaray… - Molecular …, 2006 - Wiley Online Library
Abstract The Brazilian Atlantic Forest is one of the world's major biodiversity hotspots and is
threatened by a severe habitat loss. Yet little is known about the processes that originated its …
threatened by a severe habitat loss. Yet little is known about the processes that originated its …
Prokaryotic evolution and the tree of life are two different things
Background The concept of a tree of life is prevalent in the evolutionary literature. It stems
from attempting to obtain a grand unified natural system that reflects a recurrent process of …
from attempting to obtain a grand unified natural system that reflects a recurrent process of …
The Destructive Tree Pathogen Phytophthora ramorum Originates from the Laurosilva Forests of East Asia
T Jung, M Horta Jung, JF Webber, K Kageyama… - Journal of Fungi, 2021 - mdpi.com
As global plant trade expands, tree disease epidemics caused by pathogen introductions
are increasing. Since ca 2000, the introduced oomycete Phytophthora ramorum has caused …
are increasing. Since ca 2000, the introduced oomycete Phytophthora ramorum has caused …
The timing and the mode of evolution of wild grapes (Vitis)
Wild grapes are woody climbers, found mostly in temperate regions of the northern
hemisphere, comprising the genus Vitis. Despite its importance, the evolutionary history of …
hemisphere, comprising the genus Vitis. Despite its importance, the evolutionary history of …