Pathogen typing in the genomics era: MLST and the future of molecular epidemiology

M Pérez-Losada, P Cabezas, E Castro-Nallar… - Infection, Genetics and …, 2013 - Elsevier
Multi-locus sequence typing (MLST) is a high-resolution genetic typing approach to identify
species and strains of pathogens impacting human health, agriculture (animals and plants) …

Statistical inferences in phylogeography

R Nielsen, MA Beaumont - Molecular ecology, 2009 - Wiley Online Library
In conventional phylogeographic studies, historical demographic processes are elucidated
from the geographical distribution of individuals represented on an inferred gene tree …

[PDF][PDF] POPART: full-feature software for haplotype network construction.

JW Leigh, D Bryant, S Nakagawa - Methods in Ecology & …, 2015 - researchgate.net
popart: full‐feature software for haplotype network construction Page 1 APPLICATION
POPART: full-feature software for haplotype network construction Jessica W. Leigh* and David …

Guidelines for DNA taxonomy, with a focus on the meiofauna

D Fontaneto, JF Flot, CQ Tang - Marine Biodiversity, 2015 - Springer
Describing biological diversity is a challenging endeavour, especially for the small, cryptic
animals that make up the meiofauna. The field of DNA taxonomy, ie, the use of DNA to …

The performance of phylogenetic algorithms in estimating haplotype genealogies with migration

W Salzburger, GB Ewing, A Von Haeseler - Molecular ecology, 2011 - Wiley Online Library
Genealogies estimated from haplotypic genetic data play a prominent role in various
biological disciplines in general and in phylogenetics, population genetics and …

[HTML][HTML] Worldwide forest surveys reveal forty-three new species in Phytophthora major Clade 2 with fundamental implications for the evolution and biogeography of …

T Jung, I Milenković, Y Balci, J Janoušek… - Studies in …, 2024 - ncbi.nlm.nih.gov
During 25 surveys of global Phytophthora diversity, conducted between 1998 and 2020, 43
new species were detected in natural ecosystems and, occasionally, in nurseries and …

Phylogeography of the Bothrops jararaca complex (Serpentes: Viperidae): past fragmentation and island colonization in the Brazilian Atlantic Forest

FG Grazziotin, M Monzel, S Echeverrigaray… - Molecular …, 2006 - Wiley Online Library
Abstract The Brazilian Atlantic Forest is one of the world's major biodiversity hotspots and is
threatened by a severe habitat loss. Yet little is known about the processes that originated its …

Prokaryotic evolution and the tree of life are two different things

E Bapteste, MA O'Malley, RG Beiko, M Ereshefsky… - Biology direct, 2009 - Springer
Background The concept of a tree of life is prevalent in the evolutionary literature. It stems
from attempting to obtain a grand unified natural system that reflects a recurrent process of …

The Destructive Tree Pathogen Phytophthora ramorum Originates from the Laurosilva Forests of East Asia

T Jung, M Horta Jung, JF Webber, K Kageyama… - Journal of Fungi, 2021 - mdpi.com
As global plant trade expands, tree disease epidemics caused by pathogen introductions
are increasing. Since ca 2000, the introduced oomycete Phytophthora ramorum has caused …

The timing and the mode of evolution of wild grapes (Vitis)

G Zecca, JR Abbott, WB Sun, A Spada, F Sala… - Molecular phylogenetics …, 2012 - Elsevier
Wild grapes are woody climbers, found mostly in temperate regions of the northern
hemisphere, comprising the genus Vitis. Despite its importance, the evolutionary history of …