Integrating multiple 'omics' analysis for microbial biology: application and methodologies
W Zhang, F Li, L Nie - Microbiology, 2010 - microbiologyresearch.org
Recent advances in various 'omics' technologies enable quantitative monitoring of the
abundance of various biological molecules in a high-throughput manner, and thus allow …
abundance of various biological molecules in a high-throughput manner, and thus allow …
The state of the art in the analysis of two-dimensional gel electrophoresis images
M Berth, FM Moser, M Kolbe, J Bernhardt - Applied microbiology and …, 2007 - Springer
Software-based image analysis is a crucial step in the biological interpretation of two-
dimensional gel electrophoresis experiments. Recent significant advances in image …
dimensional gel electrophoresis experiments. Recent significant advances in image …
Addressing accuracy and precision issues in iTRAQ quantitation
iTRAQ (isobaric tags for relative or absolute quantitation) is a mass spectrometry technology
that allows quantitative comparison of protein abundance by measuring peak intensities of …
that allows quantitative comparison of protein abundance by measuring peak intensities of …
Multidimensional separations-based shotgun proteomics
ML Fournier, JM Gilmore, SA Martin-Brown… - Chemical …, 2007 - ACS Publications
The proteome refers to the collection of proteins in a given biological organism or system
under a particular set of environmental conditions. The study of proteins, referred to as …
under a particular set of environmental conditions. The study of proteins, referred to as …
2DE: the phoenix of proteomics
BM Oliveira, JR Coorssen, D Martins-de-Souza - Journal of proteomics, 2014 - Elsevier
Given the rapid developments in mass spectrometry (MS) in terms of sensitivity, mass
accuracy, and throughput, some have suggested that two-dimensional gel electrophoresis …
accuracy, and throughput, some have suggested that two-dimensional gel electrophoresis …
Chitosan enhances rice seedling growth via gene expression network between nucleus and chloroplast
N Chamnanmanoontham, W Pongprayoon… - Plant Growth …, 2015 - Springer
Chitosan, a partially deacetylated form of the natural and biodegradable biopolymer chitin,
has been used as plant growth promoter in agriculture. The aim of this work was to …
has been used as plant growth promoter in agriculture. The aim of this work was to …
Comparison of detergent‐based sample preparation workflows for LTQ‐Orbitrap analysis of the Escherichia coli proteome
This work presents a comparative evaluation of several detergent‐based sample
preparation workflows for the MS‐based analysis of bacterial proteomes, performed using …
preparation workflows for the MS‐based analysis of bacterial proteomes, performed using …
An integrated proteomics and transcriptomics reference data set provides new insights into the Bradyrhizobium japonicum bacteroid metabolism in soybean root …
Bradyrhizobium japonicum, a gram‐negative soil bacterium that establishes an N2‐fixing
symbiosis with its legume host soybean (Glycine max), has been used as a symbiosis model …
symbiosis with its legume host soybean (Glycine max), has been used as a symbiosis model …
Prediction and validation of novel SigB regulon members in Bacillus subtilis and regulon structure comparison to Bacillales members
Abstract Background Sigma factor B (SigB) is the central regulator of the general stress
response in Bacillus subtilis and regulates a group of genes in response to various …
response in Bacillus subtilis and regulates a group of genes in response to various …
Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC) Applied to Quantitative Proteomics of Bacillus subtilis
We applied stable isotope labeling by amino acids in cell culture (SILAC) to large-scale
quantitative proteomics analyses of the model bacterium Bacillus subtilis in two …
quantitative proteomics analyses of the model bacterium Bacillus subtilis in two …