Regulation of gene expression in trypanosomatids: living with polycistronic transcription

C Clayton - Open biology, 2019 - royalsocietypublishing.org
In trypanosomes, RNA polymerase II transcription is polycistronic and individual mRNAs are
excised by trans-splicing and polyadenylation. The lack of individual gene transcription …

Epigenetic regulation of genomic stability by vitamin C

JP Brabson, T Leesang, S Mohammad… - Frontiers in genetics, 2021 - frontiersin.org
DNA methylation plays an important role in the maintenance of genomic stability. Ten-
eleven translocation proteins (TETs) are a family of iron (Fe2+) and α-KG-dependent …

Long-range single-molecule mapping of chromatin accessibility in eukaryotes

Z Shipony, GK Marinov, MP Swaffer… - Nature …, 2020 - nature.com
Mapping open chromatin regions has emerged as a widely used tool for identifying active
regulatory elements in eukaryotes. However, existing approaches, limited by reliance on …

Strain-specific genome evolution in Trypanosoma cruzi, the agent of Chagas disease

W Wang, D Peng, RP Baptista, Y Li, JC Kissinger… - PLoS …, 2021 - journals.plos.org
The protozoan Trypanosoma cruzi almost invariably establishes life-long infections in
humans and other mammals, despite the development of potent host immune responses …

Enzymatic synthesis of base-functionalized nucleic acids for sensing, cross-linking, and modulation of protein–DNA binding and transcription

M Hocek - Accounts of Chemical Research, 2019 - ACS Publications
Conspectus Protein–DNA interactions are important in replication, transcription, repair, as
well as epigenetic modifications of DNA, which involve methylation and demethylation of …

Mapping and elucidating the function of modified bases in DNA

EA Raiber, R Hardisty, P van Delft… - Nature Reviews …, 2017 - nature.com
Chemically modified bases exist naturally in genomic DNA. Research into these bases has
been invigorated by the discovery of several modified bases in the mammalian genome, in …

Non‐canonical bases in the genome: the regulatory information layer in DNA

T Carell, MQ Kurz, M Müller, M Rossa… - Angewandte Chemie …, 2018 - Wiley Online Library
Multicellular organisms developed the concept of specialized cells that perform specific
functions. Examples are neurons and fibroblast to name just two out of more than 200 …

Detection, structure and function of modified DNA bases

A Hofer, ZJ Liu, S Balasubramanian - Journal of the American …, 2019 - ACS Publications
While some DNA base modifications such as 5-methylcytosine have been known and
studied for decades, recent discoveries of a number of other modified bases have stimulated …

Sequencing abasic sites in DNA at single-nucleotide resolution

ZJ Liu, S Martínez Cuesta, P van Delft… - Nature …, 2019 - nature.com
In DNA, the loss of a nucleobase by hydrolysis generates an abasic site. Formed as a result
of DNA damage, as well as a key intermediate during the base excision repair pathway …

Leishmania-Host Interactions—An Epigenetic Paradigm

F Afrin, I Khan, HA Hemeg - Frontiers in immunology, 2019 - frontiersin.org
Leishmaniasis is one of the major neglected tropical diseases, for which no vaccines exist.
Chemotherapy is hampered by limited efficacy coupled with development of resistance and …