[HTML][HTML] Does intraspecific variation in rDNA copy number affect analysis of microbial communities?

A Lavrinienko, T Jernfors, JJ Koskimäki, AM Pirttilä… - Trends in …, 2021 - cell.com
Amplicon sequencing of partial regions of the ribosomal RNA loci (rDNA) is widely used to
profile microbial communities. However, the rDNA is dynamic and can exhibit substantial …

Introducing the bird chromosome database: an overview of cytogenetic studies in birds

TM Degrandi, SA Barcellos, AL Costa… - … and Genome Research, 2020 - karger.com
Bird chromosomes, which have been investigated scientifically for more than a century,
present a number of unique features. In general, bird karyotypes have a high diploid number …

[HTML][HTML] Integrative rDNAomics—importance of the oldest repetitive fraction of the eukaryote genome

R Symonová - Genes, 2019 - mdpi.com
Nuclear ribosomal RNA (rRNA) genes represent the oldest repetitive fraction universal to all
eukaryotic genomes. Their deeply anchored universality and omnipresence during …

The dynamic interplay between ribosomal DNA and transposable elements: a perspective from genomics and cytogenetics

S Garcia, A Kovarik, S Maiwald, L Mann… - Molecular Biology …, 2024 - academic.oup.com
Although both are salient features of genomes, at first glance ribosomal DNAs and
transposable elements are genetic elements with not much in common: whereas ribosomal …

High chromosomal mobility of r DNA clusters in holocentric chromosomes of Triatominae, vectors of Chagas disease (Hemiptera‐Reduviidae)

S Pita, P Lorite, A Cuadrado, Y Panzera… - Medical and …, 2022 - Wiley Online Library
Abstract The subfamily Triatominae (Hemiptera‐Reduviidae) includes more than 150 blood‐
sucking species, potential vectors of the protozoan Trypanosoma cruzi, causative agent of …

Chromosomal rearrangements and the first indication of an ♀X1X1X2X2/♂X1X2Y sex chromosome system in Rineloricaria fishes (Teleostei: Siluriformes)

L Marajó, PF Viana, AMV Ferreira… - Journal of Fish …, 2023 - Wiley Online Library
Rineloricaria is the most diverse genus within the freshwater fish subfamily Loricariinae, and
it is widely distributed in the Neotropical region. Despite limited cytogenetic data, records …

First discovered, long out of sight, finally visible: ribosomal DNA

AN Hall, E Morton, C Queitsch - Trends in Genetics, 2022 - cell.com
With the advent of long-read sequencing, previously unresolvable genomic elements are
being revisited in an effort to generate fully complete reference genomes. One such element …

[HTML][HTML] Cytogenetic evidence for sex chromosomes and karyotype evolution in anguimorphan lizards

B Augstenová, E Pensabene, L Kratochvíl, M Rovatsos - Cells, 2021 - mdpi.com
Anguimorphan lizards are a morphologically variable group of squamate reptiles with a wide
geographical distribution. In spite of their importance, they have been cytogenetically …

Evolutionary insights into the genomic organization of major ribosomal DNA in ant chromosomes

GA Teixeira, HJAC de Aguiar, F Petitclerc… - Insect Molecular …, 2021 - Wiley Online Library
The major rDNA genes are composed of tandem repeats and are part of the nucleolus
organizing regions (NORs). They are highly conserved and therefore useful in …

[HTML][HTML] Thousands of high-quality sequencing samples fail to show meaningful correlation between 5S and 45S ribosomal DNA arrays in humans

AN Hall, TN Turner, C Queitsch - Scientific reports, 2021 - nature.com
The ribosomal RNA genes (rDNA) are tandemly arrayed in most eukaryotes and exhibit vast
copy number variation. There is growing interest in integrating this variation into genotype …