The RNA recognition motif, a plastic RNA‐binding platform to regulate post‐transcriptional gene expression

C Maris, C Dominguez, FHT Allain - The FEBS journal, 2005 - Wiley Online Library
The RNA recognition motif (RRM), also known as RNA‐binding domain (RBD) or
ribonucleoprotein domain (RNP) is one of the most abundant protein domains in eukaryotes …

Phosphorylation and functions of the RNA polymerase II CTD

HP Phatnani, AL Greenleaf - Genes & development, 2006 - genesdev.cshlp.org
The C-terminal repeat domain (CTD), an unusual extension appended to the C terminus of
the largest subunit of RNA polymerase II, serves as a flexible binding scaffold for numerous …

Methylation of histone H3 by Set2 in Saccharomyces cerevisiae is linked to transcriptional elongation by RNA polymerase II

NJ Krogan, M Kim, A Tong, A Golshani… - … and cellular biology, 2003 - Am Soc Microbiol
Set2 methylates Lys36 of histone H3. We show here that yeast Set2 copurifies with RNA
polymerase II (RNAPII). Chromatin immunoprecipitation analyses demonstrated that Set2 …

Phosphorylation of serine 2 within the RNA polymerase II C-terminal domain couples transcription and 3′ end processing

SH Ahn, M Kim, S Buratowski - Molecular cell, 2004 - cell.com
The largest subunit of RNA polymerase II contains a unique C-terminal domain important for
coupling of transcription and mRNA processing. This domain consists of a repeated …

[HTML][HTML] WW and SH3 domains, two different scaffolds to recognize proline-rich ligands

MJ Macias, S Wiesner, M Sudol - FEBS letters, 2002 - Elsevier
WW domains are small protein modules composed of approximately 40 amino acids. These
domains fold as a stable, triple stranded β-sheet and recognize proline-containing ligands …

The structure and function of proline recognition domains

A Zarrinpar, RP Bhattacharyya, WA Lim - Science's STKE, 2003 - science.org
One particularly abundant group of modular recognition domains consists of those that bind
proline-rich motifs. Such modules, including the SH3, WW, and EVH1 domains, play a …

The CTD code

S Buratowski - Nature Structural & Molecular Biology, 2003 - nature.com
How does the C-terminal domain (CTD) of RNA polymerase II interact specifically with
multiple targets? A recent paper describing the structure of this domain with a mRNA …

Mechanism of SMRT corepressor recruitment by the BCL6 BTB domain

KF Ahmad, A Melnick, S Lax, D Bouchard, J Liu… - Molecular cell, 2003 - cell.com
BCL6 encodes a transcription factor that represses genes necessary for the terminal
differentiation of lymphocytes within germinal centers, and the misregulated expression of …

A field guide to ubiquitylation.

S Fang, AM Weissman - Cellular and molecular life sciences: CMLS, 2004 - europepmc.org
The capacity for exquisite regulation of ubiquitylation provides eukaryotic cells with a means
to fine-tune both protein function and levels. This complex set of processes affects myriad …

Yes-associated protein (YAP65) interacts with Smad7 and potentiates its inhibitory activity against TGF-β/Smad signaling

O Ferrigno, F Lallemand, F Verrecchia, S L'Hoste… - Oncogene, 2002 - nature.com
Members of the TGF-β family of growth factors signal from the cell surface through
serine/threonine kinase receptors. Intracellular propagation of the signal occurs by …