Global approaches for profiling transcription initiation

RA Policastro, GE Zentner - Cell Reports Methods, 2021 - cell.com
Transcription start site (TSS) selection influences transcript stability and translation as well
as protein sequence. Alternative TSS usage is pervasive in organismal development, is a …

DNA processing in the context of noncoding transcription

U Gowthaman, D García-Pichardo, Y Jin… - Trends in Biochemical …, 2020 - cell.com
RNA polymerase (RNAP) II frequently transcribes non-protein-coding DNA sequences in
eukaryotic genomes into long noncoding RNA (lncRNA). Distinct molecular mechanisms …

Evidence for an integrated gene repression mechanism based on mRNA isoform toggling in human cells

I Hollerer, JC Barker, V Jorgensen… - G3: Genes …, 2019 - academic.oup.com
We recently described an unconventional mode of gene regulation in budding yeast by
which transcriptional and translational interference collaborate to down-regulate protein …

Meiotic resetting of the cellular Sod1 pool is driven by protein aggregation, degradation, and transient LUTI-mediated repression

HM Vander Wende, M Gopi, M Onyundo… - Journal of Cell …, 2023 - rupress.org
Gametogenesis requires packaging of the cellular components needed for the next
generation. In budding yeast, this process includes degradation of many mitotically stable …

Control of meiotic entry by dual inhibition of a key mitotic transcription factor

AJ Su, SC Yendluri, E Ünal - Elife, 2024 - elifesciences.org
The mitosis to meiosis transition requires dynamic changes in gene expression, but whether
and how the mitotic transcriptional machinery is regulated during this transition is unknown …

Swi/Snf chromatin remodeling regulates transcriptional interference and gene repression

K Morse, AL Bishop, S Swerdlow, JM Leslie, E Ünal - Molecular Cell, 2024 - cell.com
Alternative transcription start sites can affect transcript isoform diversity and translation
levels. In a recently described form of gene regulation, coordinated transcriptional and …

A distinct isoform of Msp300/Nesprin organizes the perinuclear microtubule organizing center in adipose cells

GM Morton, MP Toledo, Y Zheng, C Zheng… - …, 2024 - pmc.ncbi.nlm.nih.gov
In many cell types, disparate non-centrosomal microtubule-organizing centers (ncMTOCs)
replace functional centrosomes and serve the unique needs of the cell types in which they …

Meiotic resetting of the cellular Sod1 pool is driven by protein aggregation, degradation, and transient LUTI-mediated repression

HMV Wende, M Gopi, M Onyundo, C Medrano… - bioRxiv, 2022 - biorxiv.org
Gametogenesis requires packaging of the cellular components needed for the next
generation. In budding yeast, this process includes degradation of many mitotically stable …

Use of a ubiquitous gene-editing tool in budding yeast causes off-target repression of neighboring gene protein synthesis

EN Powers, LL Allcca, E Doron-Mandel, JK Kim… - bioRxiv, 2022 - biorxiv.org
Precision genome-editing approaches have long been available in budding yeast, enabling
introduction of gene deletions, epitope tag fusions, and promoter swaps through a selection …

[图书][B] Control of Meiotic Entry by Dual Inhibition of the Key Mitotic Transcription Factor SBF

AJ Su - 2023 - search.proquest.com
Transcription factors induce dynamic changes in gene expression to drive cellular
differentiation. During the mitotic G1/S of budding yeast when the cell irreversibly commits to …