Applications of environmental DNA (eDNA) in ecology and conservation: opportunities, challenges and prospects

KC Beng, RT Corlett - Biodiversity and conservation, 2020 - Springer
Conserving biodiversity in the face of ever-increasing human pressure is hampered by our
lack of basic information on species occurrence, distribution, abundance, habitat …

The biology and ecology of coral rubble and implications for the future of coral reefs

K Wolfe, TM Kenyon, PJ Mumby - Coral Reefs, 2021 - Springer
Structural complexity provided by the living coral reef framework is the basis of the rich and
dynamic biodiversity in coral reefs. In many cases today, the reduction in habitat complexity …

Hierarchical drivers of cryptic biodiversity on coral reefs

K Wolfe, TM Kenyon, A Desbiens… - Ecological …, 2023 - Wiley Online Library
Declines in habitat structural complexity have marked ecological outcomes, as currently
observed in many of the world's ecosystems. Coral reefs have provided a model for such …

[HTML][HTML] Evaluating biodiversity for coral reef reformation and monitoring on complex 3D structures using environmental DNA (eDNA) metabarcoding

N Levy, N Simon-Blecher, S Ben-Ezra, M Yuval… - Science of The Total …, 2023 - Elsevier
Quantifying coral reef biodiversity is challenging for cryptofauna and organisms in early life
stages. We demonstrate the utility of eDNA metabarcoding as a tool for comprehensively …

Be positive: customized reference databases and new, local barcodes balance false taxonomic assignments in metabarcoding studies

F Mugnai, F Costantini, A Chenuil, M Leduc… - PeerJ, 2023 - peerj.com
Background In metabarcoding analyses, the taxonomic assignment is crucial to place
sequencing data in biological and ecological contexts. This fundamental step depends on a …

Environmental DNA metabarcoding serves as a promising method for aquatic species monitoring and management: A review focused on its workflow, applications …

M Zhang, Y Zou, S Xiao, J Hou - Marine Pollution Bulletin, 2023 - Elsevier
Marine and freshwater biodiversity is under threat from both natural and manmade causes.
Biological monitoring is currently a top priority for biodiversity protection. Given present …

Functional and phylogenetic responses of motile cryptofauna to habitat degradation

JS Stella, K Wolfe, G Roff, A Rogers… - Journal of Animal …, 2022 - Wiley Online Library
Biodiversity of terrestrial and marine ecosystems, including coral reefs, is dominated by
small, often cryptic, invertebrate taxa that play important roles in ecosystem structure and …

Seq'and ARMS shall find: DNA (meta) barcoding of Autonomous Reef Monitoring Structures across the tree of life uncovers hidden cryptobiome of tropical urban coral …

YCA Ip, JJM Chang, RM Oh, ZBR Quek… - Molecular …, 2023 - Wiley Online Library
Coral reefs are among the richest marine ecosystems on Earth, but there remains much
diversity hidden within cavities of complex reef structures awaiting discovery. While the …

Seasonality of primary production explains the richness of pioneering benthic communities

M Cecchetto, A Dettai, C Gallut, M Obst… - Nature …, 2024 - nature.com
A pattern of increasing species richness from the poles to the equator is frequently observed
in many animal taxa. Ecological limits, determined by the abiotic conditions and biotic …

Integration of DNA-based approaches in aquatic ecological assessment using benthic macroinvertebrates

S Duarte, BR Leite, MJ Feio, FO Costa, AF Filipe - Water, 2021 - mdpi.com
Benthic macroinvertebrates are among the most used biological quality elements for
assessing the condition of all types of aquatic ecosystems worldwide (ie, fresh water …