Microbial functional genes involved in nitrogen fixation, nitrification and denitrification in forest ecosystems

DJ Levy-Booth, CE Prescott, SJ Grayston - Soil Biology and Biochemistry, 2014 - Elsevier
The understanding of nitrogen (N) cycling in forest ecosystems has undergone a major shift
in the past decade as molecular methods are being used to link microorganisms to key …

[PDF][PDF] A threshold selection method from gray-level histograms

N Otsu - Automatica, 1975 - dspace.tul.cz
Summary 16S rRNA-targeted oligonucleotide probes for eubacteria (EUB338), ammonium-
oxidizing bacteria (Nsm156) and nitrite-oxidizing bacteria (Nb1000) were used for the rapid …

[HTML][HTML] AmoA-Targeted Polymerase Chain Reaction Primers for the Specific Detection and Quantification of Comammox Nitrospira in the Environment

P Pjevac, C Schauberger, L Poghosyan… - Frontiers in …, 2017 - frontiersin.org
Nitrification, the oxidation of ammonia via nitrite to nitrate, has always been considered to be
catalyzed by the concerted activity of ammonia-and nitrite-oxidizing microorganisms. Only …

The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria

GW Nicol, S Leininger, C Schleper… - Environmental …, 2008 - Wiley Online Library
Autotrophic ammonia oxidation occurs in acid soils, even though laboratory cultures of
isolated ammonia oxidizing bacteria fail to grow below neutral pH. To investigate whether …

Microbial diversity in soil: selection of microbial populations by plant and soil type and implications for disease suppressiveness

P Garbeva, JA Van Veen… - Annu. Rev. Phytopathol …, 2004 - annualreviews.org
▪ Abstract An increasing interest has emerged with respect to the importance of microbial
diversity in soil habitats. The extent of the diversity of microorganisms in soil is seen to be …

Microbial processes influencing performance of treatment wetlands: a review

JL Faulwetter, V Gagnon, C Sundberg… - Ecological …, 2009 - Elsevier
This review summarizes the microbial mechanisms responsible for removal of carbon,
nitrogen, and sulfur compounds in treatment wetlands (TWs) and identifies, categorizes and …

The metagenomics of soil

R Daniel - Nature Reviews Microbiology, 2005 - nature.com
Phylogenetic surveys of soil ecosystems have shown that the number of prokaryotic species
found in a single sample exceeds that of known cultured prokaryotes. Soil metagenomics …

Diversity, structure, and size of N2O-producing microbial communities in soils—what matters for their functioning?

G Braker, R Conrad - Advances in applied microbiology, 2011 - Elsevier
Nitrous oxide (N 2 O) is mainly generated via nitrification and denitrification processes in
soils and subsequently emitted into the atmosphere where it causes well-known radiative …

Various players in the nitrogen cycle: diversity and functions of the microorganisms involved in nitrification and denitrification

M Hayatsu, K Tago, M Saito - Soil Science and Plant Nutrition, 2008 - Taylor & Francis
Microorganisms play important roles in the nitrogen cycles of various ecosystems. Research
has revealed that a greater diversity of microorganisms is involved in the nitrogen cycle than …

Novel genes for nitrite reductase and Amo‐related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling

AH Treusch, S Leininger, A Kletzin… - Environmental …, 2005 - Wiley Online Library
Mesophilic crenarchaeota are frequently found in terrestrial and marine habitats worldwide,
but despite their considerable abundance the physiology of these as yet uncultivated …