[HTML][HTML] Insertions and deletions in protein evolution and engineering

S Savino, T Desmet, J Franceus - Biotechnology Advances, 2022 - Elsevier
Protein evolution or engineering studies are traditionally focused on amino acid
substitutions and the way these contribute to fitness. Meanwhile, the insertion and deletion …

Males, Outcrossing, and Sexual Selection in Caenorhabditis Nematodes

AD Cutter, LT Morran, PC Phillips - Genetics, 2019 - academic.oup.com
Males of Caenorhabditis elegans provide a crucial practical tool in the laboratory, but, as the
rarer and more finicky sex, have not enjoyed the same depth of research attention as …

Host and microbiome jointly contribute to environmental adaptation

C Petersen, IK Hamerich, KL Adair… - The ISME …, 2023 - academic.oup.com
Most animals and plants have associated microorganisms, collectively referred to as their
microbiomes, which can provide essential functions. Given their importance, host-associated …

Experimental estimates of germline mutation rate in eukaryotes: a phylogenetic meta-analysis

Y Wang, DJ Obbard - Evolution Letters, 2023 - academic.oup.com
Mutation is the ultimate source of all genetic variation, and over the last 10 years the ready
availability of whole-genome sequencing has permitted direct estimation of mutation rate for …

Genomic diversity landscapes in outcrossing and selfing Caenorhabditis nematodes

AA Teterina, JH Willis, M Lukac, R Jovelin… - PLoS …, 2023 - journals.plos.org
Caenorhabditis nematodes form an excellent model for studying how the mode of
reproduction affects genetic diversity, as some species reproduce via outcrossing whereas …

Environmental radiation exposure at Chornobyl has not systematically affected the genomes or chemical mutagen tolerance phenotypes of local worms

SC Tintori, D Çağlar, P Ortiz… - Proceedings of the …, 2024 - National Acad Sciences
The 1986 disaster at the Chornobyl Nuclear Power Plant transformed the surrounding
region into the most radioactive landscape known on the planet. Whether or not this sudden …

Mutability of mononucleotide repeats, not oxidative stress, explains the discrepancy between laboratory-accumulated mutations and the natural allele-frequency …

M Rajaei, AS Saxena, LM Johnson, MC Snyder… - Genome …, 2021 - genome.cshlp.org
Important clues about natural selection can be gleaned from discrepancies between the
properties of segregating genetic variants and of mutations accumulated experimentally …

The rate and molecular spectrum of mutation are selectively maintained in yeast

H Liu, J Zhang - Nature Communications, 2021 - nature.com
What determines the rate (μ) and molecular spectrum of mutation is a fundamental question.
The prevailing hypothesis asserts that natural selection against deleterious mutations has …

Interplay Between Polymorphic Short Tandem Repeats and Gene Expression Variation in Caenorhabditis elegans

G Zhang, EC Andersen - Molecular biology and evolution, 2023 - academic.oup.com
Short tandem repeats (STRs) have orders of magnitude higher mutation rates than single
nucleotide variants (SNVs) and have been proposed to accelerate evolution in many …

Fluctuations in chromatin state at regulatory loci occur spontaneously under relaxed selection and are associated with epigenetically inherited variation in C. elegans …

R Wilson, M Le Bourgeois, M Perez, P Sarkies - PLoS Genetics, 2023 - journals.plos.org
Some epigenetic information can be transmitted between generations without changes in
the underlying DNA sequence. Changes in epigenetic regulators, termed epimutations, can …