Enhancing the accuracy of next-generation sequencing for detecting rare and subclonal mutations
Mutations, the fuel of evolution, are first manifested as rare DNA changes within a population
of cells. Although next-generation sequencing (NGS) technologies have revolutionized the …
of cells. Although next-generation sequencing (NGS) technologies have revolutionized the …
Tandem repeats mediating genetic plasticity in health and disease
AJ Hannan - Nature Reviews Genetics, 2018 - nature.com
Accumulating evidence suggests that many classes of DNA repeats exhibit attributes that
distinguish them from other genetic variants, including the fact that they are more liable to …
distinguish them from other genetic variants, including the fact that they are more liable to …
Discovery and genotyping of structural variation from long-read haploid genome sequence data
In an effort to more fully understand the full spectrum of human genetic variation, we
generated deep single-molecule, real-time (SMRT) sequencing data from two haploid …
generated deep single-molecule, real-time (SMRT) sequencing data from two haploid …
Poly (disulfide) s: from synthesis to drug delivery
Bioresponsive polymers have been widely used in drug delivery because of their
degradability. For example, poly (disulfide) s with repeating disulfide bonds in the main …
degradability. For example, poly (disulfide) s with repeating disulfide bonds in the main …
Polymorphic tandem repeats within gene promoters act as modifiers of gene expression and DNA methylation in humans
Despite representing an important source of genetic variation, tandem repeats (TRs) remain
poorly studied due to technical difficulties. We hypothesized that TRs can operate as …
poorly studied due to technical difficulties. We hypothesized that TRs can operate as …
Accurate pan-cancer molecular diagnosis of microsatellite instability by single-molecule molecular inversion probe capture and high-throughput sequencing
A Waalkes, N Smith, K Penewit… - Clinical …, 2018 - academic.oup.com
BACKGROUND Microsatellite instability (MSI) is an emerging actionable phenotype in
oncology that informs tumor response to immune checkpoint pathway immunotherapy …
oncology that informs tumor response to immune checkpoint pathway immunotherapy …
Diversity and population-genetic properties of copy number variations and multicopy genes in cattle
DM Bickhart, L Xu, JL Hutchison, JB Cole… - DNA …, 2016 - academic.oup.com
The diversity and population genetics of copy number variation (CNV) in domesticated
animals are not well understood. In this study, we analysed 75 genomes of major taurine …
animals are not well understood. In this study, we analysed 75 genomes of major taurine …
CRISPR–Cas9-targeted fragmentation and selective sequencing enable massively parallel microsatellite analysis
Microsatellites are multi-allelic and composed of short tandem repeats (STRs) with
individual motifs composed of mononucleotides, dinucleotides or higher including …
individual motifs composed of mononucleotides, dinucleotides or higher including …
Approaches to sequence the HTT CAG repeat expansion and quantify repeat length variation
M Ciosi, SA Cumming, A Chatzi… - Journal of …, 2021 - content.iospress.com
Background: Huntington's disease (HD) is an autosomal dominant neurodegenerative
disorder caused by the expansion of the HTT CAG repeat. Affected individuals inherit≥ 36 …
disorder caused by the expansion of the HTT CAG repeat. Affected individuals inherit≥ 36 …
[PDF][PDF] Retrospective cell lineage reconstruction in humans by using short tandem repeats
Cell lineage analysis aims to uncover the developmental history of an organism back to its
cell of origin. Recently, novel in vivo methods utilizing genome editing enabled important …
cell of origin. Recently, novel in vivo methods utilizing genome editing enabled important …