Enhancing the accuracy of next-generation sequencing for detecting rare and subclonal mutations

JJ Salk, MW Schmitt, LA Loeb - Nature Reviews Genetics, 2018 - nature.com
Mutations, the fuel of evolution, are first manifested as rare DNA changes within a population
of cells. Although next-generation sequencing (NGS) technologies have revolutionized the …

Tandem repeats mediating genetic plasticity in health and disease

AJ Hannan - Nature Reviews Genetics, 2018 - nature.com
Accumulating evidence suggests that many classes of DNA repeats exhibit attributes that
distinguish them from other genetic variants, including the fact that they are more liable to …

Discovery and genotyping of structural variation from long-read haploid genome sequence data

J Huddleston, MJP Chaisson, KM Steinberg… - Genome …, 2017 - genome.cshlp.org
In an effort to more fully understand the full spectrum of human genetic variation, we
generated deep single-molecule, real-time (SMRT) sequencing data from two haploid …

Poly (disulfide) s: from synthesis to drug delivery

R Zhang, T Nie, Y Fang, H Huang, J Wu - Biomacromolecules, 2021 - ACS Publications
Bioresponsive polymers have been widely used in drug delivery because of their
degradability. For example, poly (disulfide) s with repeating disulfide bonds in the main …

Polymorphic tandem repeats within gene promoters act as modifiers of gene expression and DNA methylation in humans

J Quilez, A Guilmatre, P Garg, G Highnam… - Nucleic acids …, 2016 - academic.oup.com
Despite representing an important source of genetic variation, tandem repeats (TRs) remain
poorly studied due to technical difficulties. We hypothesized that TRs can operate as …

Accurate pan-cancer molecular diagnosis of microsatellite instability by single-molecule molecular inversion probe capture and high-throughput sequencing

A Waalkes, N Smith, K Penewit… - Clinical …, 2018 - academic.oup.com
BACKGROUND Microsatellite instability (MSI) is an emerging actionable phenotype in
oncology that informs tumor response to immune checkpoint pathway immunotherapy …

Diversity and population-genetic properties of copy number variations and multicopy genes in cattle

DM Bickhart, L Xu, JL Hutchison, JB Cole… - DNA …, 2016 - academic.oup.com
The diversity and population genetics of copy number variation (CNV) in domesticated
animals are not well understood. In this study, we analysed 75 genomes of major taurine …

CRISPR–Cas9-targeted fragmentation and selective sequencing enable massively parallel microsatellite analysis

GW Shin, SM Grimes, HJ Lee, BT Lau, LC Xia… - Nature …, 2017 - nature.com
Microsatellites are multi-allelic and composed of short tandem repeats (STRs) with
individual motifs composed of mononucleotides, dinucleotides or higher including …

Approaches to sequence the HTT CAG repeat expansion and quantify repeat length variation

M Ciosi, SA Cumming, A Chatzi… - Journal of …, 2021 - content.iospress.com
Background: Huntington's disease (HD) is an autosomal dominant neurodegenerative
disorder caused by the expansion of the HTT CAG repeat. Affected individuals inherit≥ 36 …

[PDF][PDF] Retrospective cell lineage reconstruction in humans by using short tandem repeats

L Tao, O Raz, Z Marx, MS Ghosh, S Huber… - Cell reports …, 2021 - cell.com
Cell lineage analysis aims to uncover the developmental history of an organism back to its
cell of origin. Recently, novel in vivo methods utilizing genome editing enabled important …