BlobToolKit–interactive quality assessment of genome assemblies

R Challis, E Richards, J Rajan… - G3: Genes …, 2020 - academic.oup.com
Reconstruction of target genomes from sequence data produced by instruments that are
agnostic as to the species-of-origin may be confounded by contaminant DNA. Whether …

The critically endangered vaquita is not doomed to extinction by inbreeding depression

JA Robinson, CC Kyriazis, SF Nigenda-Morales… - Science, 2022 - science.org
In cases of severe wildlife population decline, a key question is whether recovery efforts will
be impeded by genetic factors, such as inbreeding depression. Decades of excess mortality …

Phylogenomic resolution of the cetacean tree of life using target sequence capture

MR McGowen, G Tsagkogeorga… - Systematic …, 2020 - academic.oup.com
The evolution of cetaceans, from their early transition to an aquatic lifestyle to their
subsequent diversification, has been the subject of numerous studies. However, although …

Current global population size, post-whaling trend and historical trajectory of sperm whales

H Whitehead, M Shin - Scientific reports, 2022 - nature.com
The sperm whale lives in most deep ice-free waters of the globe. It was targeted during two
periods of whaling peaking in the 1840's and 1960's. Using a habitat suitability model, we …

Genes lost during the transition from land to water in cetaceans highlight genomic changes associated with aquatic adaptations

M Huelsmann, N Hecker, MS Springer, J Gatesy… - Science …, 2019 - science.org
The transition from land to water in whales and dolphins (cetaceans) was accompanied by
remarkable adaptations. To reveal genomic changes that occurred during this transition, we …

Return to the Sea, Get Huge, Beat Cancer: An Analysis of Cetacean Genomes Including an Assembly for the Humpback Whale (Megaptera novaeangliae)

M Tollis, J Robbins, AE Webb… - Molecular biology …, 2019 - academic.oup.com
Cetaceans are a clade of highly specialized aquatic mammals that include the largest
animals that have ever lived. The largest whales can have∼ 1,000× more cells than a …

The evolution of factor XI and the kallikrein-kinin system

MB Ponczek, A Shamanaev, A LaPlace… - Blood …, 2020 - ashpublications.org
Factor XI (FXI) is the zymogen of a plasma protease (FXIa) that contributes to hemostasis by
activating factor IX (FIX). In the original cascade model of coagulation, FXI is converted to …

[HTML][HTML] Phylogenomics of the genus Tursiops and closely related Delphininae reveals extensive reticulation among lineages and provides inference about eco …

AE Moura, K Shreves, M Pilot, KR Andrews… - Molecular phylogenetics …, 2020 - Elsevier
Phylogeographic inference has provided extensive insight into the relative roles of
geographical isolation and ecological processes during evolutionary radiations. However …

Differential evolution of the epidermal keratin cytoskeleton in terrestrial and aquatic mammals

F Ehrlich, H Fischer, L Langbein… - Molecular biology …, 2019 - academic.oup.com
Keratins are the main intermediate filament proteins of epithelial cells. In keratinocytes of the
mammalian epidermis they form a cytoskeleton that resists mechanical stress and thereby …

Genomic analysis of two phlebotomine sand fly vectors of Leishmania from the New and Old World

F Labbé, M Abdeladhim, J Abrudan… - PLoS Neglected …, 2023 - journals.plos.org
Phlebotomine sand flies are of global significance as important vectors of human disease,
transmitting bacterial, viral, and protozoan pathogens, including the kinetoplastid parasites …