Computational approaches to predict bacteriophage–host relationships
Metagenomics has changed the face of virus discovery by enabling the accurate
identification of viral genome sequences without requiring isolation of the viruses. As a …
identification of viral genome sequences without requiring isolation of the viruses. As a …
Diversity, evolutionary contribution and ecological roles of aquatic viruses
QY Zhang, JF Gui - Science China Life Sciences, 2018 - Springer
Aquatic viruses include infected viruses in aquatic animals, plants and microorganisms, and
free-floating viruses (virioplankton) in water environments. In the last three decades, a huge …
free-floating viruses (virioplankton) in water environments. In the last three decades, a huge …
Expanding the marine virosphere using metagenomics
Viruses infecting prokaryotic cells (phages) are the most abundant entities of the biosphere
and contain a largely uncharted wealth of genomic diversity. They play a critical role in the …
and contain a largely uncharted wealth of genomic diversity. They play a critical role in the …
Assembly-free single-molecule sequencing recovers complete virus genomes from natural microbial communities
Viruses are the most abundant biological entities on Earth and play key roles in host
ecology, evolution, and horizontal gene transfer. Despite recent progress in viral …
ecology, evolution, and horizontal gene transfer. Despite recent progress in viral …
Phage-centric ecological interactions in aquatic ecosystems revealed through ultra-deep metagenomics
The persistent inertia in the ability to culture environmentally abundant microbes from
aquatic ecosystems represents an obstacle in disentangling the complex web of ecological …
aquatic ecosystems represents an obstacle in disentangling the complex web of ecological …
Genomes of abundant and widespread viruses from the deep ocean
The deep sea is a massive, largely oligotrophic ecosystem, stretched over nearly 65% of the
planet's surface. Deep-sea planktonic communities are almost completely dependent upon …
planet's surface. Deep-sea planktonic communities are almost completely dependent upon …
Genome‐resolved viral and cellular metagenomes revealed potential key virus‐host interactions in a deep freshwater lake
Metagenomics has dramatically expanded the known virosphere, but freshwater viral
diversity and their ecological interaction with hosts remain poorly understood. Here, we …
diversity and their ecological interaction with hosts remain poorly understood. Here, we …
Marine phage genomics: the tip of the iceberg
B Perez Sepulveda, T Redgwell… - FEMS Microbiology …, 2016 - academic.oup.com
Marine viruses are the most abundant biological entity in the oceans, the majority of which
infect bacteria and are known as bacteriophages. Yet, the bulk of bacteriophages form part …
infect bacteria and are known as bacteriophages. Yet, the bulk of bacteriophages form part …
Combining genomic sequencing methods to explore viral diversity and reveal potential virus-host interactions
Viral diversity and virus-host interactions in oxygen-starved regions of the ocean, also
known as oxygen minimum zones (OMZs), remain relatively unexplored. Microbial …
known as oxygen minimum zones (OMZs), remain relatively unexplored. Microbial …
Associations between picocyanobacterial ecotypes and cyanophage host genes across ocean basins and depth
CA Fuchsman, DG Prieto, MD Hays, JA Cram - PeerJ, 2023 - peerj.com
Background Cyanophages, viruses that infect cyanobacteria, are globally abundant in the
ocean's euphotic zone and are a potentially important cause of mortality for marine …
ocean's euphotic zone and are a potentially important cause of mortality for marine …