Protein dynamics from solution NMR: theory and applications

JG Kempf, JP Loria - Cell Biochemistry and Biophysics, 2002 - Springer
Solution nuclear magnetic resonance (NMR) spectroscopy is unique in its ability to elucidate
the details of atomic-level structural and dynamical properties of biological macromolecules …

[图书][B] The Langevin equation: with applications to stochastic problems in physics, chemistry and electrical engineering

WT Coffey, YP Kalmykov, JT Waldron - 2004 - World Scientific
The following sections are included: Criticisms of the Langevin Equation Doob's
Interpretation of the Langevin Equation Nonlinear Langevin Equation with a Multiplicative …

Model-free or not?

K Zumpfe, AA Smith - Frontiers in Molecular Biosciences, 2021 - frontiersin.org
Relaxation in nuclear magnetic resonance is a powerful method for obtaining spatially
resolved, timescale-specific dynamics information about molecular systems. However …

Slow motional ESR in complex fluids: the slowly relaxing local structure model of solvent cage effects

A Polimeno, JH Freed - The Journal of Physical Chemistry, 1995 - ACS Publications
A detailed formulation is presented for the analysis of slow motional ESR in terms of the
reorientation of the probe molecule within a dynamic solvent cage. This formulation is …

An assessment of the applicability of multifrequency ESR to study the complex dynamics of biomolecules

Z Liang, JH Freed - The Journal of Physical Chemistry B, 1999 - ACS Publications
It is shown that the commonly used models for analyzing ESR spectra from nitroxide spin-
labeled proteins or DNA systems are special cases of the more general slowly relaxing local …

Parametrization, molecular dynamics simulation, and calculation of electron spin resonance spectra of a nitroxide spin label on a polyalanine α-helix

D Sezer, JH Freed, B Roux - The journal of physical chemistry B, 2008 - ACS Publications
The nitroxide spin label 1-oxyl-2, 2, 5, 5-tetramethylpyrroline-3-methyl-methanethiosulfonate
(MTSSL), commonly used in site-directed spin labeling of proteins, is studied with molecular …

A Structural Mode-Coupling Approach to 15N NMR Relaxation in Proteins

V Tugarinov, Z Liang, YE Shapiro… - Journal of the …, 2001 - ACS Publications
The two-body Slowly Relaxing Local Structure (SRLS) model was applied to 15N NMR spin
relaxation in proteins and compared with the commonly used original and extended model …

The physical basis of model-free analysis of NMR relaxation data from proteins and complex fluids

B Halle - The Journal of chemical physics, 2009 - pubs.aip.org
NMR relaxation experiments have provided a wealth of information about molecular motions
in macromolecules and ordered fluids. Even though a rigorous theory of spin relaxation is …

Structural dynamics of bio-macromolecules by NMR: The slowly relaxing local structure approach

E Meirovitch, YE Shapiro, A Polimeno… - Progress in nuclear …, 2010 - Elsevier
Protein dynamics by NMR has been reviewed extensively in recent years [1–10]. These
surveys show decisively that information on structure should be complemented by …

250-GHz EPR of nitroxides in the slow-motional regime: models of rotational diffusion

KA Earle, DE Budil, JH Freed - The Journal of Physical Chemistry, 1993 - ACS Publications
Rx/Rz= 0.5). However, a mixed model of free-diffusionalmotion about the y axis with
Brownian motion of this axis yields an Ny close to the fast-motional value with comparable …