Using what we already have: uncovering new drug repurposing strategies in existing omics data
JM Pulley, JP Rhoads, RN Jerome… - Annual review of …, 2020 - annualreviews.org
The promise of drug repurposing is to accelerate the translation of knowledge to treatment of
human disease, bypassing common challenges associated with drug development to be …
human disease, bypassing common challenges associated with drug development to be …
Advancing drug safety science by integrating molecular knowledge with post‐marketing adverse event reports
TG Soldatos, S Kim, S Schmidt… - CPT …, 2022 - Wiley Online Library
Promising drug development efforts may frequently fail due to unintended adverse reactions.
Several methods have been developed to analyze such data, aiming to improve …
Several methods have been developed to analyze such data, aiming to improve …
A network paradigm predicts drug synergistic effects using downstream protein–protein interactions
In some cases, drug combinations affect adverse outcome phenotypes by binding the same
protein; however, drug‐binding proteins are associated through protein–protein interaction …
protein; however, drug‐binding proteins are associated through protein–protein interaction …
From random to predictive: a context-specific interaction framework improves selection of drug protein–protein interactions for unknown drug pathways
With high drug attrition, protein–protein interaction (PPI) network models are attractive as
efficient methods for predicting drug outcomes by analyzing proteins downstream of drug …
efficient methods for predicting drug outcomes by analyzing proteins downstream of drug …
Leveraging human genetics to identify safety signals prior to drug marketing approval and clinical use
Introduction When a new drug or biologic product enters the market, its full spectrum of side
effects is not yet fully understood, as use in the real world often uncovers nuances not …
effects is not yet fully understood, as use in the real world often uncovers nuances not …
Preclinical side effect prediction through pathway engineering of protein interaction network models
M Alidoost, JL Wilson - CPT: Pharmacometrics & Systems …, 2024 - Wiley Online Library
Modeling tools aim to predict potential drug side effects, although they suffer from imperfect
performance. Specifically, protein–protein interaction models predict drug effects from …
performance. Specifically, protein–protein interaction models predict drug effects from …
Beta-2 adrenergic receptor agonism alters astrocyte phagocytic activity and has potential applications to psychiatric disease
ER Bowen, P DiGiacomo, HP Fraser, K Guttenplan… - Discover Mental …, 2023 - Springer
Schizophrenia is a debilitating condition necessitating more efficacious therapies. Previous
studies suggested that schizophrenia development is associated with aberrant synaptic …
studies suggested that schizophrenia development is associated with aberrant synaptic …
Drug target, class level, and PathFX pathway information share utility for machine learning prediction of common drug-induced side effects
Introduction: Development of drugs often fails due to toxicity and intolerable side effects.
Recent advancements in the scientific community have rendered it possible to leverage …
Recent advancements in the scientific community have rendered it possible to leverage …
PhenClust, a standalone tool for identifying trends within sets of biological phenotypes using semantic similarity and the Unified Medical Language System …
JL Wilson, M Wong, N Stepanov, D Petkovic… - JAMIA …, 2021 - academic.oup.com
Objectives We sought to cluster biological phenotypes using semantic similarity and create
an easy-to-install, stable, and reproducible tool. Materials and Methods We generated …
an easy-to-install, stable, and reproducible tool. Materials and Methods We generated …
PathFXweb: a web application for identifying drug safety and efficacy phenotypes
JL Wilson, M Wong, A Chalke, N Stepanov… - …, 2019 - academic.oup.com
Limited efficacy and intolerable safety limit therapeutic development and identification of
potential liabilities earlier in development could significantly improve this process …
potential liabilities earlier in development could significantly improve this process …