Emerging concepts in the science of vaccine adjuvants

B Pulendran, P S. Arunachalam… - Nature Reviews Drug …, 2021 - nature.com
Adjuvants are vaccine components that enhance the magnitude, breadth and durability of
the immune response. Following its introduction in the 1920s, alum remained the only …

Human immune diversity: from evolution to modernity

A Liston, S Humblet-Baron, D Duffy, A Goris - Nature immunology, 2021 - nature.com
The extreme diversity of the human immune system, forged and maintained throughout
evolutionary history, provides a potent defense against opportunistic pathogens. At the same …

Single-cell RNA-seq reveals cell type–specific molecular and genetic associations to lupus

RK Perez, MG Gordon, M Subramaniam, MC Kim… - Science, 2022 - science.org
Systemic lupus erythematosus (SLE) is a heterogeneous autoimmune disease. Knowledge
of circulating immune cell types and states associated with SLE remains incomplete. We …

Integrated analysis of multimodal single-cell data

Y Hao, S Hao, E Andersen-Nissen, WM Mauck… - Cell, 2021 - cell.com
The simultaneous measurement of multiple modalities represents an exciting frontier for
single-cell genomics and necessitates computational methods that can define cellular states …

Joint probabilistic modeling of single-cell multi-omic data with totalVI

A Gayoso, Z Steier, R Lopez, J Regier, KL Nazor… - Nature …, 2021 - nature.com
The paired measurement of RNA and surface proteins in single cells with cellular indexing
of transcriptomes and epitopes by sequencing (CITE-seq) is a promising approach to …

The single-cell epigenomic and transcriptional landscape of immunity to influenza vaccination

F Wimmers, M Donato, A Kuo, T Ashuach, S Gupta… - Cell, 2021 - cell.com
Emerging evidence indicates a fundamental role for the epigenome in immunity. Here, we
mapped the epigenomic and transcriptional landscape of immunity to influenza vaccination …

Pan-vaccine analysis reveals innate immune endotypes predictive of antibody responses to vaccination

S Fourati, LE Tomalin, MP Mulè, DG Chawla… - Nature …, 2022 - nature.com
Several studies have shown that the pre-vaccination immune state is associated with the
antibody response to vaccination. However, the generalizability and mechanisms that …

Confronting false discoveries in single-cell differential expression

JW Squair, M Gautier, C Kathe, MA Anderson… - Nature …, 2021 - nature.com
Differential expression analysis in single-cell transcriptomics enables the dissection of cell-
type-specific responses to perturbations such as disease, trauma, or experimental …

[HTML][HTML] Time-resolved systems immunology reveals a late juncture linked to fatal COVID-19

C Liu, AJ Martins, WW Lau, N Rachmaninoff, J Chen… - Cell, 2021 - cell.com
COVID-19 exhibits extensive patient-to-patient heterogeneity. To link immune response
variation to disease severity and outcome over time, we longitudinally assessed circulating …

Adaptive immune responses to SARS-CoV-2 persist in the pharyngeal lymphoid tissue of children

Q Xu, P Milanez-Almeida, AJ Martins, AJ Radtke… - Nature …, 2023 - nature.com
Most studies of adaptive immunity to SARS-CoV-2 infection focus on peripheral blood, which
may not fully reflect immune responses at the site of infection. Using samples from 110 …