Challenges and opportunities to computationally deconvolve heterogeneous tissue with varying cell sizes using single-cell RNA-sequencing datasets

SK Maden, SH Kwon, LA Huuki-Myers… - Genome biology, 2023 - Springer
Deconvolution of cell mixtures in “bulk” transcriptomic samples from homogenate human
tissue is important for understanding disease pathologies. However, several experimental …

The interaction between ageing and Alzheimer's disease: insights from the hallmarks of ageing

Y Liu, Y Tan, Z Zhang, M Yi, L Zhu, W Peng - Translational …, 2024 - Springer
Ageing is a crucial risk factor for Alzheimer's disease (AD) and is characterised by systemic
changes in both intracellular and extracellular microenvironments that affect the entire body …

BACE-1 inhibition facilitates the transition from homeostatic microglia to DAM-1

N Singh, MR Benoit, J Zhou, B Das… - Science …, 2022 - science.org
BACE-1 is required for generating β-amyloid (Aβ) peptides in Alzheimer's disease (AD).
Here, we report that microglial BACE-1 regulates the transition of homeostatic to stage 1 …

Single cell transcriptomes and multiscale networks from persons with and without Alzheimer's disease

Q Wang, J Antone, E Alsop, R Reiman, C Funk… - Nature …, 2024 - nature.com
The emergence of single nucleus RNA sequencing (snRNA-seq) offers to revolutionize the
study of Alzheimer's disease (AD). Integration with complementary multiomics data such as …

Molecular profiling of human substantia nigra identifies diverse neuron types associated with vulnerability in Parkinson's disease

Q Wang, M Wang, I Choi, L Sarrafha, M Liang, L Ho… - Science …, 2024 - science.org
Parkinson's disease (PD) is characterized pathologically by the loss of dopaminergic (DA)
neurons in the substantia nigra (SN). Whether cell types beyond DA neurons in the SN show …

Viral involvement in Alzheimer's disease

A Sait, C Angeli, AJ Doig, PJR Day - ACS chemical neuroscience, 2021 - ACS Publications
Alzheimer's disease (AD) is characterized by the presence of β-amyloid plaques (Aβ) and
neurofibrillary tangles (NFTs) in the brain. The prevalence of the disease is increasing and is …

Spatially resolved transcriptomics technology facilitates cancer research

Q Wang, Y Zhi, M Zi, Y Mo, Y Wang, Q Liao… - Advanced …, 2023 - Wiley Online Library
Single cell RNA sequencing (scRNA‐seq) provides a great convenience for studying tumor
occurrence and development for its ability to study gene expression at the individual cell …

BACE1 regulates expression of Clusterin in astrocytes for enhancing clearance of β-amyloid peptides

J Zhou, N Singh, J Galske, J Hudobenko, X Hu… - Molecular …, 2023 - Springer
Background Abnormal accumulation of amyloid beta peptide (Aβ) in the brain induces a
cascade of pathological changes in Alzheimer's disease (AD), and inhibiting BACE1, which …

Alzheimer's Disease Detection Using Deep Learning on Neuroimaging: A Systematic Review

MG Alsubaie, S Luo, K Shaukat - Machine Learning and Knowledge …, 2024 - mdpi.com
Alzheimer's disease (AD) is a pressing global issue, demanding effective diagnostic
approaches. This systematic review surveys the recent literature (2018 onwards) to …

Unraveling the intercellular communication disruption and key pathways in Alzheimer's disease: an integrative study of single-nucleus transcriptomes and genetic …

A Liu, BS Fernandes, C Citu, Z Zhao - Alzheimer's Research & Therapy, 2024 - Springer
Background Recently, single-nucleus RNA-seq (snRNA-seq) analyses have revealed
important cellular and functional features of Alzheimer's disease (AD), a prevalent …