Synthetic biology for the directed evolution of protein biocatalysts: navigating sequence space intelligently
The amino acid sequence of a protein affects both its structure and its function. Thus, the
ability to modify the sequence, and hence the structure and activity, of individual proteins in …
ability to modify the sequence, and hence the structure and activity, of individual proteins in …
Evolving strategies for enzyme engineering
Directed evolution is a common technique to engineer enzymes for a diverse set of
applications. Structural information and an understanding of how proteins respond to …
applications. Structural information and an understanding of how proteins respond to …
Machine learning-guided acyl-ACP reductase engineering for improved in vivo fatty alcohol production
JC Greenhalgh, SA Fahlberg, BF Pfleger… - Nature …, 2021 - nature.com
Alcohol-forming fatty acyl reductases (FARs) catalyze the reduction of thioesters to alcohols
and are key enzymes for microbial production of fatty alcohols. Many metabolic engineering …
and are key enzymes for microbial production of fatty alcohols. Many metabolic engineering …
A family of thermostable fungal cellulases created by structure-guided recombination
P Heinzelman, CD Snow, I Wu… - Proceedings of the …, 2009 - National Acad Sciences
SCHEMA structure-guided recombination of 3 fungal class II cellobiohydrolases (CBH II
cellulases) has yielded a collection of highly thermostable CBH II chimeras. Twenty-three of …
cellulases) has yielded a collection of highly thermostable CBH II chimeras. Twenty-three of …
Laboratory-directed protein evolution
L Yuan, I Kurek, J English… - … and Molecular Biology …, 2005 - Am Soc Microbiol
Systematic approaches to directed evolution of proteins have been documented since the
1970s. The ability to recruit new protein functions arises from the considerable substrate …
1970s. The ability to recruit new protein functions arises from the considerable substrate …
In vivo selection of a computationally designed SCHEMA AAV library yields a novel variant for infection of adult neural stem cells in the SVZ
DS Ojala, S Sun, JL Santiago-Ortiz, MG Shapiro… - Molecular Therapy, 2018 - cell.com
Directed evolution continues to expand the capabilities of complex biomolecules for a range
of applications, such as adeno-associated virus vectors for gene therapy; however …
of applications, such as adeno-associated virus vectors for gene therapy; however …
Self-driving laboratories to autonomously navigate the protein fitness landscape
Protein engineering has nearly limitless applications across chemistry, energy and
medicine, but creating new proteins with improved or novel functions remains slow, labor …
medicine, but creating new proteins with improved or novel functions remains slow, labor …
Next step in gene delivery: modern approaches and further perspectives of AAV tropism modification
MA Korneyenkov, AA Zamyatnin Jr - Pharmaceutics, 2021 - mdpi.com
Today, adeno-associated virus (AAV) is an extremely popular choice for gene therapy
delivery. The safety profile and simplicity of the genome organization are the decisive …
delivery. The safety profile and simplicity of the genome organization are the decisive …
Structure-guided recombination creates an artificial family of cytochromes P450
CR Otey, M Landwehr, JB Endelman, K Hiraga… - PLoS …, 2006 - journals.plos.org
Creating artificial protein families affords new opportunities to explore the determinants of
structure and biological function free from many of the constraints of natural selection. We …
structure and biological function free from many of the constraints of natural selection. We …
Optimal design of stochastic DNA synthesis protocols based on generative sequence models
EN Weinstein, AN Amin… - International …, 2022 - proceedings.mlr.press
Generative probabilistic models of biological sequences have widespread existing and
potential applications in analyzing, predicting and designing proteins, RNA and genomes …
potential applications in analyzing, predicting and designing proteins, RNA and genomes …