Clusters, trees, and phylogenetic network classes
L Zhang - … and Phylogenetics: Seminal Contributions of Bernard …, 2019 - Springer
Rooted phylogenetic networks are rooted acyclic digraphs that are used to represent
complex evolution, where reticulation events (such as horizontal gene transfer …
complex evolution, where reticulation events (such as horizontal gene transfer …
Integrative Single Cell Atlas Revealed Intratumoral Heterogeneity Generation from an Adaptive Epigenetic Cell State in Human Bladder Urothelial Carcinoma
Y Xiao, W Jin, K Qian, L Ju, G Wang, K Wu… - Advanced …, 2024 - Wiley Online Library
Intratumor heterogeneity (ITH) of bladder cancer (BLCA) contributes to therapy resistance
and immune evasion affecting clinical prognosis. The molecular and cellular mechanisms …
and immune evasion affecting clinical prognosis. The molecular and cellular mechanisms …
[HTML][HTML] Counting and enumerating galled networks
Galled trees are widely studied as a recombination model in population genetics. This class
of phylogenetic networks is generalized into galled networks by relaxing a structural …
of phylogenetic networks is generalized into galled networks by relaxing a structural …
Compression of phylogenetic networks and algorithm for the tree containment problem
ADM Gunawan, H Yan, L Zhang - Journal of Computational Biology, 2019 - liebertpub.com
Rooted phylogenetic networks are rooted acyclic digraphs. They are used to model complex
evolution where hybridization, recombination, and other reticulation events play a role. A …
evolution where hybridization, recombination, and other reticulation events play a role. A …
Emergence of an adaptive epigenetic cell state in human bladder urothelial carcinoma evolution
Intratumor heterogeneity (ITH) of bladder cancer (BLCA) facilitates therapy resistance and
immune evasion to affect clinical prognosis directly. However, the molecular and cellular …
immune evasion to affect clinical prognosis directly. However, the molecular and cellular …
Recent Progresses in the Combinatorial and Algorithmic Study of Rooted Phylogenetic Networks
L Zhang - … , WALCOM 2020, Singapore, Singapore, March 31 …, 2020 - Springer
Galled trees are studied as a recombination model in theoretical population genetics. Tree-
child networks, reticulation-visible networks and tree-based networks can be considered as …
child networks, reticulation-visible networks and tree-based networks can be considered as …
The compressions of reticulation-visible networks are tree-child
ADM Gunawan, H Yan, L Zhang - arXiv preprint arXiv:1806.07625, 2018 - arxiv.org
Rooted phylogenetic networks are rooted acyclic digraphs. They are used to model complex
evolution where hybridization, recombination and other reticulation events play important …
evolution where hybridization, recombination and other reticulation events play important …