Classes of explicit phylogenetic networks and their biological and mathematical significance

S Kong, JC Pons, L Kubatko, K Wicke - Journal of Mathematical Biology, 2022 - Springer
The evolutionary relationships among organisms have traditionally been represented using
rooted phylogenetic trees. However, due to reticulate processes such as hybridization or …

[HTML][HTML] Genome structure-based Juglandaceae phylogenies contradict alignment-based phylogenies and substitution rates vary with DNA repair genes

YM Ding, XX Pang, Y Cao, WP Zhang… - Nature …, 2023 - nature.com
In lineages of allopolyploid origin, sets of homoeologous chromosomes may coexist that
differ in gene content and syntenic structure. Presence or absence of genes and …

Phylogenomic and macroevolutionary evidence for an explosive radiation of a plant genus in the Miocene

H Kong, FL Condamine, L Yang, AJ Harris… - Systematic …, 2022 - academic.oup.com
Mountain systems harbor a substantial fraction of global biodiversity and, thus, provide
excellent opportunities to study rapid diversification and to understand the historical …

[HTML][HTML] The Metasequoia genome and evolutionary relationships among redwoods

F Fu, C Song, C Wen, L Yang, Y Guo, X Yang… - Plant …, 2023 - cell.com
Abstract Redwood trees (Sequoioideae), including Metasequoia glyptostroboides (dawn
redwood), Sequoiadendron giganteum (giant sequoia), and Sequoia sempervirens (coast …

Replicated radiation of a plant clade along a cloud forest archipelago

MJ Donoghue, DAR Eaton, CA Maya-Lastra… - Nature Ecology & …, 2022 - nature.com
Replicated radiations, in which sets of similar forms evolve repeatedly within different
regions, can provide powerful insights into parallel evolution and the assembly of functional …

Summary tests of introgression are highly sensitive to rate variation across lineages

LE Frankel, C Ané - Systematic Biology, 2023 - academic.oup.com
The evolutionary implications and frequency of hybridization and introgression are
increasingly being recognized across the tree of life. To detect hybridization from multi-locus …

Phylogenomics reveals widespread hybridization and polyploidization in Henckelia (Gesneriaceae)

LH Yang, XZ Shi, F Wen, M Kang - Annals of Botany, 2023 - academic.oup.com
Abstract Background and Aims Hybridization has long been recognized as an important
process for plant evolution and is often accompanied by polyploidization, another prominent …

Recombination variation shapes phylogeny and introgression in wild diploid strawberries

C Feng, J Wang, A Liston, M Kang - Molecular Biology and …, 2023 - academic.oup.com
Introgressive hybridization is widespread in wild plants and has important consequences.
However, frequent hybridization between species makes the estimation of the species' …

Hybridization and Transgressive Evolution Generate Diversity in an Adaptive Radiation of Anolis Lizards

GOU Wogan, ML Yuan, DL Mahler… - Systematic biology, 2023 - academic.oup.com
Interspecific hybridization may act as a major force contributing to the evolution of
biodiversity. Although generally thought to reduce or constrain divergence between 2 …

Detectability of varied hybridization scenarios using genome-scale hybrid detection methods

M Bjorner, EK Molloy, CN Dewey… - arXiv preprint arXiv …, 2022 - arxiv.org
Hybridization events complicate the accurate reconstruction of phylogenies, as they lead to
patterns of genetic heritability that are unexpected under traditional, bifurcating models of …