The Allen Ancient DNA Resource (AADR) a curated compendium of ancient human genomes

S Mallick, A Micco, M Mah, H Ringbauer, I Lazaridis… - Scientific Data, 2024 - nature.com
More than two hundred papers have reported genome-wide data from ancient humans.
While the raw data for the vast majority are fully publicly available testifying to the …

A genetic history of the Balkans from Roman frontier to Slavic migrations

I Olalde, P Carrión, I Mikić, N Rohland, S Mallick… - Cell, 2023 - cell.com
The rise and fall of the Roman Empire was a socio-political process with enormous
ramifications for human history. The Middle Danube was a crucial frontier and a crossroads …

Genetic history of East-Central Europe in the first millennium CE

I Stolarek, M Zenczak, L Handschuh, A Juras… - Genome Biology, 2023 - Springer
Abstract Background The appearance of Slavs in East-Central Europe has been the subject
of an over 200-year debate driven by two conflicting hypotheses. The first assumes that …

Modeling of African population history using f-statistics is biased when applying all previously proposed SNP ascertainment schemes

P Flegontov, U Işıldak, R Maier, E Yüncü… - PloS …, 2023 - journals.plos.org
f-statistics have emerged as a first line of analysis for making inferences about demographic
history from genome-wide data. Not only are they guaranteed to allow robust tests of the fits …

TKGWV2: an ancient DNA relatedness pipeline for ultra-low coverage whole genome shotgun data

DM Fernandes, O Cheronet, P Gelabert, R Pinhasi - Scientific Reports, 2021 - nature.com
Estimation of genetically related individuals is playing an increasingly important role in the
ancient DNA field. In recent years, the numbers of sequenced individuals from single sites …

Medieval DNA from Soqotra points to Eurasian origins of an isolated population at the crossroads of Africa and Arabia

K Sirak, J Jansen Van Rensburg, E Brielle… - Nature ecology & …, 2024 - nature.com
Soqotra, an island situated at the mouth of the Gulf of Aden in the northwest Indian Ocean
between Africa and Arabia, is home to~ 60,000 people subsisting through fishing and semi …

Fine-scale sampling uncovers the complexity of migrations in 5th–6th century Pannonia

DN Vyas, I Koncz, A Modi, BG Mende, Y Tian… - Current Biology, 2023 - cell.com
As the collapse of the Western Roman Empire accelerated during the 4th and 5th centuries,
arriving" barbarian" groups began to establish new communities in the border provinces of …

False discovery rates of qpAdm-based screens for genetic admixture

E Yüncü, U Işıldak, MP Williams, CD Huber… - bioRxiv, 2023 - biorxiv.org
Although a broad range of methods exists for reconstructing population history from genome-
wide single nucleotide polymorphism data, just a few methods gained popularity in …

Testing times: disentangling admixture histories in recent and complex demographies using ancient DNA

MP Williams, P Flegontov, R Maier, CD Huber - Genetics, 2024 - academic.oup.com
Our knowledge of human evolutionary history has been greatly advanced by
paleogenomics. Since the 2020s, the study of ancient DNA has increasingly focused on …

[PDF][PDF] Genetics and the African past

ME Prendergast, EA Sawchuk… - Oxf Res Encycl Afr …, 2022 - reich.hms.harvard.edu
Africa harbors the greatest human genetic diversity on the planet, a fact that has inspired
extensive investigation of the population structure found across the continent and the …