[HTML][HTML] Bottom-up proteomics: advancements in sample preparation

VA Duong, H Lee - International journal of molecular sciences, 2023 - mdpi.com
Liquid chromatography–tandem mass spectrometry (LC–MS/MS)-based proteomics is a
powerful technique for profiling proteomes of cells, tissues, and body fluids. Typical bottom …

[HTML][HTML] Biomarkers in neurodegenerative diseases: proteomics spotlight on ALS and Parkinson's disease

R Raghunathan, K Turajane, LC Wong - International Journal of …, 2022 - mdpi.com
Neurodegenerative diseases such as amyotrophic lateral sclerosis (ALS) and Parkinson's
disease (PD) are both characterized by pathogenic protein aggregates that correlate with …

[HTML][HTML] Evaluation and refinement of sample preparation methods for extracellular matrix proteome coverage

MC McCabe, LR Schmitt, RC Hill… - Molecular & Cellular …, 2021 - ASBMB
The extracellular matrix is a key component of tissues, yet it is underrepresented in
proteomic datasets. Identification and evaluation of proteins in the extracellular matrix (ECM) …

Multiplexed imaging mass spectrometry of the extracellular matrix using serial enzyme digests from formalin-fixed paraffin-embedded tissue sections

CL Clift, RR Drake, A Mehta, PM Angel - Analytical and bioanalytical …, 2021 - Springer
We report a multiplexed imaging mass spectrometry method which spatially localizes and
selectively accesses the extracellular matrix on formalin-fixed paraffin-embedded tissue …

[HTML][HTML] A glycomics and proteomics study of aging and Parkinson's disease in human brain

R Raghunathan, JD Hogan, A Labadorf, RH Myers… - Scientific Reports, 2020 - nature.com
Previous studies on Parkinson's disease mechanisms have shown dysregulated
extracellular transport of α-synuclein and growth factors in the extracellular space. In the …

[HTML][HTML] In-depth matrisome and glycoproteomic analysis of human brain glioblastoma versus control tissue

MK Sethi, M Downs, C Shao, WE Hackett… - Molecular & Cellular …, 2022 - ASBMB
Glioblastoma (GBM) is the most common and malignant primary brain tumor. The
extracellular matrix, also known as the matrisome, helps determine glioma invasion …

[HTML][HTML] Proteomics in forensic analysis: Applications for human samples

VA Duong, JM Park, HJ Lim, H Lee - Applied Sciences, 2021 - mdpi.com
Proteomics, the large-scale study of all proteins of an organism or system, is a powerful tool
for studying biological systems. It can provide a holistic view of the physiological and …

Analysis of carbohydrates and glycoconjugates by matrix‐assisted laser desorption/ionization mass spectrometry: An update for 2019–2020

DJ Harvey - Mass Spectrometry Reviews, 2023 - Wiley Online Library
This review is the tenth update of the original article published in 1999 on the application of
matrix‐assisted laser desorption/ionization (MALDI) mass spectrometry to the analysis of …

Matrisome changes in Parkinson's disease

M Downs, MK Sethi, R Raghunathan, MD Layne… - Analytical and …, 2022 - Springer
Extracellular matrix (ECM) proteins, collectively known as the matrisome, include collagens,
glycoproteins, and proteoglycans. Alterations in the matrisome have been implicated in the …

Advances in the proteomic profiling of the matrisome and adhesome

L Krasny, PH Huang - Expert Review of Proteomics, 2021 - Taylor & Francis
Introduction The matrisome and adhesome comprise proteins that are found within or are
associated with the extracellular matrix (ECM) and adhesion complexes, respectively …