Codon usage pattern of the ancestor of green plants revealed through Rhodophyta
H Yao, T Li, Z Ma, X Wang, L Xu, Y Zhang, Y Cai… - BMC genomics, 2023 - Springer
Rhodophyta are among the closest known relatives of green plants. Studying the codons of
their genomes can help us understand the codon usage pattern and characteristics of the …
their genomes can help us understand the codon usage pattern and characteristics of the …
Human tRNAs with inosine 34 are essential to efficiently translate eukarya-specific low-complexity proteins
AG Torres, M Rodríguez-Escribà… - Nucleic Acids …, 2021 - academic.oup.com
The modification of adenosine to inosine at the wobble position (I34) of tRNA anticodons is
an abundant and essential feature of eukaryotic tRNAs. The expansion of inosine-containing …
an abundant and essential feature of eukaryotic tRNAs. The expansion of inosine-containing …
Codon usage bias in chloroplast genes implicate adaptive evolution of four ginger species
Q Yang, C Xin, QS Xiao, YT Lin, L Li… - Frontiers in Plant …, 2023 - frontiersin.org
Codon usage bias (CUB) refers to different codons exhibiting varying frequencies of usage
in the genome. Studying CUB is crucial for understanding genome structure, function, and …
in the genome. Studying CUB is crucial for understanding genome structure, function, and …
The Complete Mitochondrial Genome of Mytilisepta virgata (Mollusca: Bivalvia), Novel Gene Rearrangements, and the Phylogenetic Relationships of Mytilidae
M Xu, Z Gu, J Huang, B Guo, L Jiang, K Xu, Y Ye, J Li - Genes, 2023 - mdpi.com
The circular mitochondrial genome of Mytilisepta virgata spans 14,713 bp, which contains
13 protein-coding genes (PCGs), 2 ribosomal RNA genes, and 22 transfer RNA genes …
13 protein-coding genes (PCGs), 2 ribosomal RNA genes, and 22 transfer RNA genes …
Detection of horizontal gene transfer in the genome of the choanoflagellate Salpingoeca rosetta
DM Matriano, RA Alegado, C Conaco - Scientific reports, 2021 - nature.com
Horizontal gene transfer (HGT), the movement of heritable materials between distantly
related organisms, is crucial in eukaryotic evolution. However, the scale of HGT in …
related organisms, is crucial in eukaryotic evolution. However, the scale of HGT in …
Comparative Analysis of Codon Usage Patterns in Nuclear and Chloroplast Genome of Dalbergia (Fabaceae)
ZK Wang, Y Liu, HY Zheng, MQ Tang, SQ Xie - Genes, 2023 - mdpi.com
The Dalbergia plants are widely distributed across more than 130 tropical and subtropical
countries and have significant economic and medicinal value. Codon usage bias (CUB) is a …
countries and have significant economic and medicinal value. Codon usage bias (CUB) is a …
[HTML][HTML] Re-evaluating loricate choanoflagellate phylogenetics: molecular evidence points to the paraphyly of tectiform species
M Carr, BSC Leadbeater - Protist, 2022 - Elsevier
Highlights•The previously unresolved root of Acanthoecida is identified.•Rare genomic
changes support the proposed root.•Codon bias is identified as a putative source of …
changes support the proposed root.•Codon bias is identified as a putative source of …
Hidden patterns of codon usage bias across kingdoms
Y Deng, F de Lima Hedayioglu… - Journal of The …, 2020 - royalsocietypublishing.org
The genetic code is necessarily degenerate with 64 possible nucleotide triplets being
translated into 20 amino acids. Eighteen out of the 20 amino acids are encoded by multiple …
translated into 20 amino acids. Eighteen out of the 20 amino acids are encoded by multiple …
The systematic codon usage bias has an important effect on genetic adaption in native species
AS Panja - Gene, 2024 - Elsevier
Random mutations increase genetic variety and natural selection enhances adaption over
generations. Codon usage biases (CUB) provide clues about the genome adaptation …
generations. Codon usage biases (CUB) provide clues about the genome adaptation …
A genomic survey of transposable elements in the choanoflagellate Salpingoeca rosetta reveals selection on codon usage
J Southworth, CA Grace, AO Marron, N Fatima, M Carr - Mobile DNA, 2019 - Springer
Background Unicellular species make up the majority of eukaryotic diversity, however most
studies on transposable elements (TEs) have centred on multicellular host species. Such …
studies on transposable elements (TEs) have centred on multicellular host species. Such …