A foundation model for clinician-centered drug repurposing

K Huang, P Chandak, Q Wang, S Havaldar, A Vaid… - Nature Medicine, 2024 - nature.com
Drug repurposing—identifying new therapeutic uses for approved drugs—is often a
serendipitous and opportunistic endeavour to expand the use of drugs for new diseases …

Leveraging pleiotropy for the improved treatment of psychiatric disorders

DJ Woodward, JG Thorp, CM Middeldorp… - Molecular …, 2024 - nature.com
Over 90% of drug candidates fail in clinical trials, while it takes 10–15 years and one billion
US dollars to develop a single successful drug. Drug development is more challenging for …

Zero-shot drug repurposing with geometric deep learning and clinician centered design

K Huang, P Chandak, Q Wang, S Havaldar, A Vaid… - medRxiv, 2023 - medrxiv.org
Of the several thousand diseases that affect humans, only about 500 have treatments
approved by the US Food and Drug Administration. Even for those with approved …

Expanding drug targets for 112 chronic diseases using a machine learning-assisted genetic priority score

R Chen, Á Duffy, BO Petrazzini, HM Vy, D Stein… - Nature …, 2024 - nature.com
Identifying genetic drivers of chronic diseases is necessary for drug discovery. Here, we
develop a machine learning-assisted genetic priority score, which we call ML-GPS, that …

Rare variant contribution to the heritability of coronary artery disease

G Rocheleau, SL Clarke, G Auguste… - Nature …, 2024 - nature.com
Whole genome sequences (WGS) enable discovery of rare variants which may contribute to
missing heritability of coronary artery disease (CAD). To measure their contribution, we …

[HTML][HTML] Exome sequencing of UK birth cohorts

M Koko, L Fabian, I Popov… - Wellcome Open …, 2024 - wellcomeopenresearch.org
Birth cohort studies involve repeated surveys of large numbers of individuals from birth and
throughout their lives. They collect information useful for a wide range of life course research …

Clinical Advancement Forecasting

E Czech, R Wojdyla, D Himmelstein, D Frank, N Miller… - medRxiv, 2024 - medrxiv.org
Choosing which drug targets to pursue for a given disease is one of the most impactful
decisions made in the global development of new medicines. This study examines the …

Multi-omics characterization of type 2 diabetes associated genetic variation

R Mandla, K Lorenz, X Yin, O Bocher… - medRxiv, 2024 - pmc.ncbi.nlm.nih.gov
Discerning the mechanisms driving type 2 diabetes (T2D) pathophysiology from genome-
wide association studies (GWAS) remains a challenge. To this end, we integrated omics …

Enhancing Inverse Modeling in Groundwater Systems through Machine Learning: A Comprehensive Comparative Study

J Chen, Z Dai, S Yin, M Zhang… - Hydrology and Earth …, 2024 - hess.copernicus.org
Machine learning has significantly improved inverse modeling for groundwater systems.
One promising development is the tandem neural network architecture (TNNA), which …

Specificity, length, and luck: How genes are prioritized by rare and common variant association studies

JP Spence, H Mostafavi, M Ota, N Milind, T Gjorgjieva… - bioRxiv, 2024 - biorxiv.org
Standard genome-wide association studies (GWAS) and rare variant burden tests are
essential tools for identifying trait-relevant genes. Although these methods are conceptually …