Genome-editing technologies: principles and applications

T Gaj, SJ Sirk, S Shui, J Liu - Cold Spring Harbor …, 2016 - cshperspectives.cshlp.org
Targeted nucleases have provided researchers with the ability to manipulate virtually any
genomic sequence, enabling the facile creation of isogenic cell lines and animal models for …

Synthetic zinc finger proteins: the advent of targeted gene regulation and genome modification technologies

CA Gersbach, T Gaj, CF Barbas III - Accounts of chemical …, 2014 - ACS Publications
Conspectus The understanding of gene regulation and the structure and function of the
human genome increased dramatically at the end of the 20th century. Yet the technologies …

Large-scale design of robust genetic circuits with multiple inputs and outputs for mammalian cells

BH Weinberg, NTH Pham, LD Caraballo… - Nature …, 2017 - nature.com
Engineered genetic circuits for mammalian cells often require extensive fine-tuning to
perform as intended. We present a robust, general, scalable system, called'Boolean logic …

A programmable Cas9-serine recombinase fusion protein that operates on DNA sequences in mammalian cells

B Chaikind, JL Bessen, DB Thompson… - Nucleic acids …, 2016 - academic.oup.com
We describe the development of 'recCas9', an RNA-programmed small serine recombinase
that functions in mammalian cells. We fused a catalytically inactive dCas9 to the catalytic …

Site-specific recombinases: molecular machines for the Genetic Revolution

FJ Olorunniji, SJ Rosser, WM Stark - Biochemical Journal, 2016 - portlandpress.com
The fields of molecular genetics, biotechnology and synthetic biology are demanding ever
more sophisticated molecular tools for programmed precise modification of cell genomic …

Selection platforms for directed evolution in synthetic biology

PAG Tizei, E Csibra, L Torres… - Biochemical Society …, 2016 - portlandpress.com
Life on Earth is incredibly diverse. Yet, underneath that diversity, there are a number of
constants and highly conserved processes: all life is based on DNA and RNA; the genetic …

Engineering altered protein–DNA recognition specificity

AJ Bogdanove, A Bohm, JC Miller… - Nucleic Acids …, 2018 - academic.oup.com
Protein engineering is used to generate novel protein folds and assemblages, to impart new
properties and functions onto existing proteins, and to enhance our understanding of …

The serine recombinases

WM Stark - Microbiology Spectrum, 2014 - Am Soc Microbiol
In site-specific recombination, two short DNA sequences ('sites') are each cut at specific
points in both strands, and the cut ends are rejoined to new partners. The enzymes that …

A New Era of Genome Integration Simply Cut and Paste!

Z Liu, Y Liang, EL Ang, H Zhao - ACS synthetic biology, 2017 - ACS Publications
Genome integration is a powerful tool in both basic and applied biological research.
However, traditional genome integration, which is typically mediated by homologous …

RNA-guided recombinase-Cas9 fusion targets genomic DNA deletion and integration

K Standage-Beier, N Brookhouser… - The CRISPR …, 2019 - liebertpub.com
CRISPR-based technologies have become central to genome engineering. However,
CRISPR-based editing strategies are dependent on the repair of DNA breaks via …