Overview of multiplex immunohistochemistry/immunofluorescence techniques in the era of cancer immunotherapy

WCC Tan, SN Nerurkar, HY Cai, HHM Ng… - Cancer …, 2020 - Wiley Online Library
Conventional immunohistochemistry (IHC) is a widely used diagnostic technique in tissue
pathology. However, this technique is associated with a number of limitations, including high …

Spatial mapping of protein composition and tissue organization: a primer for multiplexed antibody-based imaging

JW Hickey, EK Neumann, AJ Radtke, JM Camarillo… - Nature …, 2022 - nature.com
Tissues and organs are composed of distinct cell types that must operate in concert to
perform physiological functions. Efforts to create high-dimensional biomarker catalogs of …

Whole-cell segmentation of tissue images with human-level performance using large-scale data annotation and deep learning

NF Greenwald, G Miller, E Moen, A Kong, A Kagel… - Nature …, 2022 - nature.com
A principal challenge in the analysis of tissue imaging data is cell segmentation—the task of
identifying the precise boundary of every cell in an image. To address this problem we …

[HTML][HTML] Targeting Pin1 renders pancreatic cancer eradicable by synergizing with immunochemotherapy

K Koikawa, S Kibe, F Suizu, N Sekino, N Kim, TD Manz… - Cell, 2021 - cell.com
Pancreatic ductal adenocarcinoma (PDAC) is characterized by notorious resistance to
current therapies attributed to inherent tumor heterogeneity and highly desmoplastic and …

[HTML][HTML] A human breast atlas integrating single-cell proteomics and transcriptomics

GK Gray, CMC Li, JM Rosenbluth, LM Selfors… - Developmental cell, 2022 - cell.com
The breast is a dynamic organ whose response to physiological and pathophysiological
conditions alters its disease susceptibility, yet the specific effects of these clinical variables …

Antigen dominance hierarchies shape TCF1+ progenitor CD8 T cell phenotypes in tumors

ML Burger, AM Cruz, GE Crossland, G Gaglia… - Cell, 2021 - cell.com
CD8 T cell responses against different tumor neoantigens occur simultaneously, yet little is
known about the interplay between responses and its impact on T cell function and tumor …

DNA-barcoded signal amplification for imaging mass cytometry enables sensitive and highly multiplexed tissue imaging

T Hosogane, R Casanova, B Bodenmiller - Nature Methods, 2023 - nature.com
Imaging mass cytometry (IMC) is a highly multiplexed, antibody-based imaging method that
captures heterogeneous spatial protein expression patterns at subcellular resolution. Here …

Unsupervised discovery of tissue architecture in multiplexed imaging

J Kim, S Rustam, JM Mosquera, SH Randell… - Nature …, 2022 - nature.com
Multiplexed imaging and spatial transcriptomics enable highly resolved spatial
characterization of cellular phenotypes, but still largely depend on laborious manual …

Image-based cell phenotyping with deep learning

A Pratapa, M Doron, JC Caicedo - Current opinion in chemical biology, 2021 - Elsevier
A cell's phenotype is the culmination of several cellular processes through a complex
network of molecular interactions that ultimately result in a unique morphological signature …

Multimodal imaging mass spectrometry: next generation molecular mapping in biology and medicine

EK Neumann, KV Djambazova… - Journal of the …, 2020 - ACS Publications
Imaging mass spectrometry has become a mature molecular mapping technology that is
used for molecular discovery in many medical and biological systems. While powerful by …