Genetic linkage analysis in the age of whole-genome sequencing

J Ott, J Wang, SM Leal - Nature Reviews Genetics, 2015 - nature.com
For many years, linkage analysis was the primary tool used for the genetic mapping of
Mendelian and complex traits with familial aggregation. Linkage analysis was largely …

Review of current methods, applications, and data management for the bioinformatics analysis of whole exome sequencing

R Bao, L Huang, J Andrade, W Tan… - Cancer …, 2014 - journals.sagepub.com
The advent of next-generation sequencing technologies has greatly promoted advances in
the study of human diseases at the genomic, transcriptomic, and epigenetic levels. Exome …

Haplotype-resolved whole-genome sequencing by contiguity-preserving transposition and combinatorial indexing

S Amini, D Pushkarev, L Christiansen, E Kostem… - Nature …, 2014 - nature.com
Haplotype-resolved genome sequencing enables the accurate interpretation of medically
relevant genetic variation, deep inferences regarding population history and non-invasive …

VarAFT: a variant annotation and filtration system for human next generation sequencing data

JP Desvignes, M Bartoli, V Delague… - Nucleic acids …, 2018 - academic.oup.com
With the rapidly developing high-throughput sequencing technologies known as next
generation sequencing or NGS, our approach to gene hunting and diagnosis has drastically …

[图书][B] Handbook of human genetic linkage

JD Terwilliger, J Ott - 1994 - books.google.com
In his book Analysis of Human Genetic Linkage Jurg Ott laid out the principles by which
geneticists perform studies of genetic linkage in humans. Here, in the Handbook of Human …

Clinical exome sequencing—mistakes and caveats

J Corominas, SP Smeekens, MR Nelen… - Human …, 2022 - Wiley Online Library
Massive parallel sequencing technology has become the predominant technique for genetic
diagnostics and research. Many genetic laboratories have wrestled with the challenges of …

DOMINO: using machine learning to predict genes associated with dominant disorders

M Quinodoz, B Royer-Bertrand, K Cisarova… - The American Journal of …, 2017 - cell.com
In contrast to recessive conditions with biallelic inheritance, identification of dominant
(monoallelic) mutations for Mendelian disorders is more difficult, because of the abundance …

Mutations in PGAP3 impair GPI-anchor maturation, causing a subtype of hyperphosphatasia with mental retardation

MF Howard, Y Murakami, AT Pagnamenta… - The American Journal of …, 2014 - cell.com
Glycosylphophatidylinositol (GPI)-anchored proteins play important roles in many biological
processes, and mutations affecting proteins involved in the synthesis of the GPI anchor are …

The population genetics of human disease: The case of recessive, lethal mutations

CEG Amorim, Z Gao, Z Baker, JF Diesel… - PLoS …, 2017 - journals.plos.org
Do the frequencies of disease mutations in human populations reflect a simple balance
between mutation and purifying selection? What other factors shape the prevalence of …

How to identify pathogenic mutations among all those variations: variant annotation and filtration in the genome sequencing era

D Salgado, MI Bellgard, JP Desvignes… - Human …, 2016 - Wiley Online Library
High‐throughput sequencing technologies have become fundamental for the identification
of disease‐causing mutations in human genetic diseases both in research and clinical …