The primary transcriptome of barley chloroplasts: numerous noncoding RNAs and the dominating role of the plastid-encoded RNA polymerase

P Zhelyazkova, CM Sharma, KU Förstner, K Liere… - The Plant …, 2012 - academic.oup.com
Gene expression in plastids of higher plants is dependent on two different transcription
machineries, a plastid-encoded bacterial-type RNA polymerase (PEP) and a nuclear …

Plastid encoded RNA polymerase activity and expression of photosynthesis genes required for embryo and seed development in Arabidopsis

D Kremnev, Å Strand - Frontiers in plant science, 2014 - frontiersin.org
Chloroplast biogenesis and function is essential for proper plant embryo and seed
development but the molecular mechanisms underlying the role of plastids during …

Genome-scale mapping reveals complex regulatory activities of RpoN in Yersinia pseudotuberculosis

AKMF Mahmud, K Nilsson, A Fahlgren, R Navais… - Msystems, 2020 - Am Soc Microbiol
RpoN, an alternative sigma factor commonly known as σ54, is implicated in persistent
stages of Yersinia pseudotuberculosis infections in which genes associated with this …

[HTML][HTML] Transcriptome analysis of Clematis lanuginosa: Novel features of the molecular events occurring under heat-shock stress

L Li, S Wang, Q Li, L Sun, X Han, L Gao… - Ornamental Plant …, 2022 - maxapress.com
The weak heat tolerance of Clematis ornamental varieties negatively affects their
ornamental qualities in the summer. To elucidate heat resistance mechanisms, Clematis …

Optimal growth temperature and intergenic distances in bacteria, archaea, and plastids of rhodophytic branch

VA Lyubetsky, OA Zverkov, LI Rubanov… - BioMed Research …, 2020 - Wiley Online Library
The lengths of intergenic regions between neighboring genes that are convergent,
divergent, or unidirectional were calculated for plastids of the rhodophytic branch and …

Chloroplast gene expression—RNA synthesis and processing

T Börner, P Zhelyazkova, J Legen… - Plastid biology, 2014 - Springer
Both transcription and transcript processing are more complex in chloroplasts than in
bacteria. Plastid genes are transcribed by a plastid-encoded RNA polymerase (PEP) and …

Transcription regulation of plastid genes involved in sulfate transport in Viridiplantae

VA Lyubetsky, AV Seliverstov… - BioMed Research …, 2013 - Wiley Online Library
This study considers transcription regulation of plastid genes involved in sulfate transport in
the parasites of invertebrate (Helicosporidium sp.) and other species of the Viridiplantae. A …

A Database of Plastid Protein Families from Red Algae and Apicomplexa and Expression Regulation of the moeB Gene

OA Zverkov, AV Seliverstov… - BioMed Research …, 2015 - Wiley Online Library
We report the database of plastid protein families from red algae, secondary and tertiary
rhodophyte‐derived plastids, and Apicomplexa constructed with the novel method to infer …

Modeling RNA polymerase interaction in mitochondria of chordates

VA Lyubetsky, OA Zverkov, SA Pirogov, LI Rubanov… - Biology Direct, 2012 - Springer
Background In previous work, we introduced a concept, a mathematical model and its
computer realization that describe the interaction between bacterial and phage type RNA …

[PDF][PDF] Evolution of Chromosome Structures

RA Gershgorin, KY Gorbunov, AV Seliverstov… - Information Technology …, 2015 - lab6.iitp.ru
An effective algorithm to reconstruct chromosomal structures is developed together with its
computer implementation. The algorithm is applied to study chromosomal evolution in …