[HTML][HTML] Artificial intelligence to deep learning: machine intelligence approach for drug discovery

R Gupta, D Srivastava, M Sahu, S Tiwari, RK Ambasta… - Molecular …, 2021 - Springer
Drug designing and development is an important area of research for pharmaceutical
companies and chemical scientists. However, low efficacy, off-target delivery, time …

Machine learning applications in genetics and genomics

MW Libbrecht, WS Noble - Nature Reviews Genetics, 2015 - nature.com
The field of machine learning, which aims to develop computer algorithms that improve with
experience, holds promise to enable computers to assist humans in the analysis of large …

Understanding multicellular function and disease with human tissue-specific networks

CS Greene, A Krishnan, AK Wong, E Ricciotti… - Nature …, 2015 - nature.com
Tissue and cell-type identity lie at the core of human physiology and disease. Understanding
the genetic underpinnings of complex tissues and individual cell lineages is crucial for …

Sequencing and beyond: integrating molecular'omics' for microbial community profiling

EA Franzosa, T Hsu, A Sirota-Madi… - Nature Reviews …, 2015 - nature.com
High-throughput DNA sequencing has proven invaluable for investigating diverse
environmental and host-associated microbial communities. In this Review, we discuss …

[HTML][HTML] A large-scale evaluation of computational protein function prediction

P Radivojac, WT Clark, TR Oron, AM Schnoes… - Nature …, 2013 - nature.com
Automated annotation of protein function is challenging. As the number of sequenced
genomes rapidly grows, the overwhelming majority of protein products can only be …

Robust rank aggregation for gene list integration and meta-analysis

R Kolde, S Laur, P Adler, J Vilo - Bioinformatics, 2012 - academic.oup.com
Motivation: The continued progress in developing technological platforms, availability of
many published experimental datasets, as well as different statistical methods to analyze …

Decoding disease: from genomes to networks to phenotypes

AK Wong, RSG Sealfon, CL Theesfeld… - Nature Reviews …, 2021 - nature.com
Interpreting the effects of genetic variants is key to understanding individual susceptibility to
disease and designing personalized therapeutic approaches. Modern experimental …

Methods for biological data integration: perspectives and challenges

V Gligorijević, N Pržulj - Journal of the Royal Society …, 2015 - royalsocietypublishing.org
Rapid technological advances have led to the production of different types of biological data
and enabled construction of complex networks with various types of interactions between …

Prioritizing candidate disease genes by network-based boosting of genome-wide association data

I Lee, UM Blom, PI Wang, JE Shim… - Genome …, 2011 - genome.cshlp.org
Network “guilt by association”(GBA) is a proven approach for identifying novel disease
genes based on the observation that similar mutational phenotypes arise from functionally …

GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox

P Zimmermann, M Hirsch-Hoffmann, L Hennig… - Plant …, 2004 - academic.oup.com
High-throughput gene expression analysis has become a frequent and powerful research
tool in biology. At present, however, few software applications have been developed for …