Targeting strategies for tissue-specific drug delivery

Z Zhao, A Ukidve, J Kim, S Mitragotri - Cell, 2020 - cell.com
Off-target effects of systemically administered drugs have been a major hurdle in designing
therapies with desired efficacy and acceptable toxicity. Developing targeting strategies to …

Natural products as sources of new drugs over the 30 years from 1981 to 2010

DJ Newman, GM Cragg - Journal of natural products, 2012 - ACS Publications
This review is an updated and expanded version of the three prior reviews that were
published in this journal in 1997, 2003, and 2007. In the case of all approved therapeutic …

PEP-FOLD3: faster de novo structure prediction for linear peptides in solution and in complex

A Lamiable, P Thévenet, J Rey, M Vavrusa… - Nucleic acids …, 2016 - academic.oup.com
Abstract Structure determination of linear peptides of 5–50 amino acids in aqueous solution
and interacting with proteins is a key aspect in structural biology. PEP-FOLD3 is a novel …

Highly flexible ligand docking: Benchmarking of the DockThor program on the LEADS-PEP protein–peptide data set

KB Santos, IA Guedes, ALM Karl… - Journal of Chemical …, 2020 - ACS Publications
Protein–peptide interactions play a crucial role in many cellular and biological functions,
which justify the increasing interest in the development of peptide-based drugs. However …

PEP-FOLD: an updated de novo structure prediction server for both linear and disulfide bonded cyclic peptides

P Thevenet, Y Shen, J Maupetit, F Guyon… - Nucleic acids …, 2012 - academic.oup.com
In the context of the renewed interest of peptides as therapeutics, it is important to have an
on-line resource for 3D structure prediction of peptides with well-defined structures in …

Peptide–nanoparticle conjugates: a next generation of diagnostic and therapeutic platforms?

W Jeong, J Bu, LJ Kubiatowicz, SS Chen, YS Kim… - Nano …, 2018 - Springer
Peptide–nanoparticle conjugates (PNCs) have recently emerged as a versatile tool for
biomedical applications. Synergism between the two promising classes of materials allows …

Targeting protein–protein interactions as an anticancer strategy

AA Ivanov, FR Khuri, H Fu - Trends in pharmacological sciences, 2013 - cell.com
The emergence and convergence of cancer genomics, targeted therapies, and network
oncology have significantly expanded the landscape of protein–protein interaction (PPI) …

Rosetta FlexPepDock web server—high resolution modeling of peptide–protein interactions

N London, B Raveh, E Cohen, G Fathi… - Nucleic acids …, 2011 - academic.oup.com
Peptide–protein interactions are among the most prevalent and important interactions in the
cell, but a large fraction of those interactions lack detailed structural characterization. The …

Systematic comparison and comprehensive evaluation of 80 amino acid descriptors in peptide QSAR modeling

P Zhou, Q Liu, T Wu, Q Miao, S Shang… - Journal of chemical …, 2021 - ACS Publications
The peptide quantitative structure–activity relationship (QSAR), also known as the
quantitative sequence–activity model (QSAM), has attracted much attention in the bio-and …

Noble metal nanoparticle biosensors: from fundamental studies toward point-of-care diagnostics

H Geng, S Vilms Pedersen, Y Ma… - Accounts of chemical …, 2022 - ACS Publications
Conspectus Noble metal nanoparticles (NMNPs) have become firmly established as
effective agents to detect various biomolecules with extremely high sensitivity. This ability …