Transcriptional regulation by calcium, calcineurin, and NFAT

PG Hogan, L Chen, J Nardone, A Rao - Genes & development, 2003 - genesdev.cshlp.org
The NFAT family of transcription factors encompasses five proteins evolutionarily related to
the Rel/NFκB family (Chytil and Verdine 1996; Graef et al. 2001b). The primordial family …

Applied bioinformatics for the identification of regulatory elements

WW Wasserman, A Sandelin - Nature Reviews Genetics, 2004 - nature.com
The compilation of multiple metazoan genome sequences and the deluge of large-scale
expression data have combined to motivate the maturation of bioinformatics methods for the …

Initial sequencing and comparative analysis of the mouse genome

European Bioinformatics Institute: Birney Ewan 3 … - Nature, 2002 - nature.com
The sequence of the mouse genome is a key informational tool for understanding the
contents of the human genome and a key experimental tool for biomedical research. Here …

VISTA: computational tools for comparative genomics

KA Frazer, L Pachter, A Poliakov, EM Rubin… - Nucleic acids …, 2004 - academic.oup.com
Abstract Comparison of DNA sequences from different species is a fundamental method for
identifying functional elements in genomes. Here, we describe the VISTA family of tools …

Genome sequence of the Brown Norway rat yields insights into mammalian evolution

University of Utah Weiss Robert B. 14 Dunn Diane M … - Nature, 2004 - nature.com
The laboratory rat (Rattus norvegicus) is an indispensable tool in experimental medicine
and drug development, having made inestimable contributions to human health. We report …

The diploid genome sequence of an individual human

S Levy, G Sutton, PC Ng, L Feuk, AL Halpern… - PLoS …, 2007 - journals.plos.org
Presented here is a genome sequence of an individual human. It was produced from∼ 32
million random DNA fragments, sequenced by Sanger dideoxy technology and assembled …

Architecture and evolution of a minute plant genome

E Ibarra-Laclette, E Lyons, G Hernández-Guzmán… - Nature, 2013 - nature.com
It has been argued that the evolution of plant genome size is principally unidirectional and
increasing owing to the varied action of whole-genome duplications (WGDs) and mobile …

Serum response factor: toggling between disparate programs of gene expression

JM Miano - Journal of molecular and cellular cardiology, 2003 - Elsevier
Serum response factor (SRF) is a widely expressed transcription factor involved in
orchestrating disparate programs of gene expression linked to muscle differentiation and …

Leaf shape evolution through duplication, regulatory diversification, and loss of a homeobox gene

D Vlad, D Kierzkowski, MI Rast, F Vuolo, R Dello Ioio… - Science, 2014 - science.org
In this work, we investigate morphological differences between Arabidopsis thaliana, which
has simple leaves, and its relative Cardamine hirsuta, which has dissected leaves …

Evaluation of myc E-box phylogenetic footprints in glycolytic genes by chromatin immunoprecipitation assays

J Kim, KI Zeller, Y Wang, AG Jegga… - … and cellular biology, 2004 - Taylor & Francis
Prediction of gene regulatory sequences using phylogenetic footprinting has advanced
considerably but lacks experimental validation. Here, we report whether transcription factor …