Using omics approaches to understand pulmonary diseases

M Kan, M Shumyatcher, BE Himes - Respiratory research, 2017 - Springer
Omics approaches are high-throughput unbiased technologies that provide snapshots of
various aspects of biological systems and include: 1) genomics, the measure of DNA …

Perspectives on systems modeling of human peripheral blood mononuclear cells

P Sen, E Kemppainen, M Orešič - Frontiers in molecular biosciences, 2018 - frontiersin.org
Human peripheral blood mononuclear cells (PBMCs) are the key drivers of the immune
responses. These cells undergo activation, proliferation and differentiation into various …

The multiMiR R package and database: integration of microRNA–target interactions along with their disease and drug associations

Y Ru, KJ Kechris, B Tabakoff, P Hoffman… - Nucleic acids …, 2014 - academic.oup.com
Abstract microRNAs (miRNAs) regulate expression by promoting degradation or repressing
translation of target transcripts. miRNA target sites have been catalogued in databases …

Plasma sphingolipids associated with chronic obstructive pulmonary disease phenotypes

RP Bowler, S Jacobson, C Cruickshank… - American journal of …, 2015 - atsjournals.org
Rationale: Chronic obstructive pulmonary disease (COPD) occurs in a minority of smokers
and is characterized by intermittent exacerbations and clinical subphenotypes such as …

Chronic Exposure to PM2.5 Nitrate, Sulfate, and Ammonium Causes Respiratory System Impairments in Mice

J Zhang, H Cheng, D Wang, Y Zhu… - Environmental …, 2021 - ACS Publications
Water-soluble inorganic (WSI) ions are major components of ambient air PM2. 5 (particulate
matter of diameter≤ 2.5 μm); however, their potential health effects are understudied. On …

Role of sphingolipids in the pathobiology of lung inflammation

R Ghidoni, A Caretti, P Signorelli - Mediators of inflammation, 2015 - Wiley Online Library
Sphingolipid bioactivities in the respiratory airways and the roles of the proteins that handle
them have been extensively investigated. Gas or inhaled particles or microorganisms come …

Pathophysiology and genomics of bronchiectasis

L Perea, R Faner, JD Chalmers… - European Respiratory …, 2024 - publications.ersnet.org
Bronchiectasis is a complex and heterogeneous inflammatory chronic respiratory disease
with an unknown cause in around 30–40% of patients. The presence of airway infection …

Common genetic polymorphisms influence blood biomarker measurements in COPD

W Sun, K Kechris, S Jacobson, MB Drummond… - PLoS …, 2016 - journals.plos.org
Implementing precision medicine for complex diseases such as chronic obstructive lung
disease (COPD) will require extensive use of biomarkers and an in-depth understanding of …

Metabolomics and transcriptomics pathway approach reveals outcome-specific perturbations in COPD

CI Cruickshank-Quinn, S Jacobson, G Hughes… - Scientific reports, 2018 - nature.com
Chronic obstructive pulmonary disease (COPD) comprises multiple phenotypes such as
airflow obstruction, emphysema, and frequent episodes of acute worsening of respiratory …

[HTML][HTML] Systemic alterations in neutrophils and their precursors in early-stage chronic obstructive pulmonary disease

TS Kapellos, K Baßler, W Fujii, C Nalkurthi, AC Schaar… - Cell reports, 2023 - cell.com
Systemic inflammation is established as part of late-stage severe lung disease, but
molecular, functional, and phenotypic changes in peripheral immune cells in early disease …